Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02097 and SMc02096 overlap by 1 nucleotides SMc02096 and SMc02095 are separated by 130 nucleotides SMc02095 and SMc02094 are separated by 248 nucleotides
SMc02097: SMc02097 - UDP pyrophosphate synthase, at 1,611,255 to 1,611,998
SMc02097
SMc02096: SMc02096 - phosphatidate cytidylyltransferase, at 1,611,998 to 1,612,831
SMc02096
SMc02095: SMc02095 - hypothetical protein, at 1,612,962 to 1,614,086
SMc02095
SMc02094: SMc02094 - outer membrane transmembrane protein, at 1,614,335 to 1,616,665
SMc02094
Position (kb)
1612
1613
1614
1615 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1612.845 kb on - strand at 1612.851 kb on + strand at 1612.851 kb on + strand at 1612.851 kb on + strand at 1612.852 kb on - strand at 1612.852 kb on - strand at 1612.852 kb on - strand at 1612.873 kb on + strand at 1612.874 kb on - strand at 1612.952 kb on - strand at 1612.961 kb on + strand at 1612.961 kb on + strand at 1612.962 kb on - strand at 1612.969 kb on + strand at 1613.052 kb on + strand at 1613.052 kb on + strand at 1613.053 kb on - strand at 1613.265 kb on - strand, within SMc02095 at 1613.265 kb on - strand, within SMc02095 at 1613.370 kb on + strand, within SMc02095 at 1613.371 kb on - strand, within SMc02095 at 1613.508 kb on + strand, within SMc02095 at 1613.509 kb on - strand, within SMc02095 at 1613.689 kb on - strand, within SMc02095 at 1613.740 kb on + strand, within SMc02095 at 1613.741 kb on - strand, within SMc02095 at 1613.885 kb on + strand, within SMc02095 at 1613.911 kb on + strand, within SMc02095 at 1613.912 kb on - strand, within SMc02095 at 1613.912 kb on - strand, within SMc02095 at 1613.912 kb on - strand, within SMc02095 at 1613.952 kb on + strand, within SMc02095 at 1613.953 kb on - strand, within SMc02095 at 1614.017 kb on - strand at 1614.017 kb on - strand at 1614.119 kb on - strand at 1614.119 kb on - strand at 1614.178 kb on + strand at 1614.179 kb on - strand at 1614.189 kb on - strand at 1614.198 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 1,612,845 - +2.0 1,612,851 + +1.2 1,612,851 + -1.5 1,612,851 + -1.1 1,612,852 - +1.7 1,612,852 - +1.4 1,612,852 - +0.8 1,612,873 + +0.3 1,612,874 - -1.9 1,612,952 - +0.9 1,612,961 + +1.0 1,612,961 + +1.1 1,612,962 - +2.6 1,612,969 + -1.2 1,613,052 + -2.0 1,613,052 + +2.5 1,613,053 - +0.4 1,613,265 - SMc02095 0.27 +0.8 1,613,265 - SMc02095 0.27 +2.5 1,613,370 + SMc02095 0.36 +1.4 1,613,371 - SMc02095 0.36 +1.2 1,613,508 + SMc02095 0.49 +1.4 1,613,509 - SMc02095 0.49 +0.1 1,613,689 - SMc02095 0.65 +0.2 1,613,740 + SMc02095 0.69 +1.1 1,613,741 - SMc02095 0.69 -0.2 1,613,885 + SMc02095 0.82 -0.5 1,613,911 + SMc02095 0.84 +2.4 1,613,912 - SMc02095 0.84 +2.0 1,613,912 - SMc02095 0.84 +2.3 1,613,912 - SMc02095 0.84 +2.3 1,613,952 + SMc02095 0.88 -0.3 1,613,953 - SMc02095 0.88 +2.2 1,614,017 - -0.1 1,614,017 - +2.3 1,614,119 - +2.4 1,614,119 - +0.8 1,614,178 + +2.4 1,614,179 - +0.9 1,614,189 - -0.7 1,614,198 + +0.8
Or see this region's nucleotide sequence