Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01513 and SMc01512 are separated by 57 nucleotides SMc01512 and SMc01511 are separated by 4 nucleotides
SMc01513: SMc01513 - hemin transport protein, at 2,616,470 to 2,617,537
SMc01513
SMc01512: SMc01512 - hemin binding periplasmic transmembrane protein, at 2,617,595 to 2,618,545
SMc01512
SMc01511: SMc01511 - hemin transport system permease transmembrane protein, at 2,618,550 to 2,619,650
SMc01511
Position (kb)
2617
2618
2619 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2616.725 kb on + strand, within SMc01513 at 2616.932 kb on + strand, within SMc01513 at 2616.938 kb on - strand, within SMc01513 at 2616.938 kb on - strand, within SMc01513 at 2616.938 kb on - strand, within SMc01513 at 2616.938 kb on - strand, within SMc01513 at 2617.793 kb on + strand, within SMc01512 at 2617.793 kb on + strand at 2617.793 kb on + strand, within SMc01512 at 2617.793 kb on + strand, within SMc01512 at 2617.793 kb on + strand, within SMc01512 at 2617.880 kb on + strand, within SMc01512 at 2617.880 kb on + strand, within SMc01512 at 2618.018 kb on + strand, within SMc01512 at 2618.018 kb on + strand, within SMc01512 at 2618.018 kb on + strand, within SMc01512 at 2618.018 kb on + strand, within SMc01512 at 2618.019 kb on - strand, within SMc01512 at 2618.239 kb on + strand, within SMc01512 at 2618.288 kb on + strand, within SMc01512 at 2618.516 kb on + strand at 2618.991 kb on + strand, within SMc01511 at 2618.991 kb on + strand, within SMc01511 at 2618.991 kb on + strand, within SMc01511 at 2618.991 kb on + strand, within SMc01511 at 2618.991 kb on + strand, within SMc01511 at 2618.992 kb on - strand, within SMc01511 at 2618.992 kb on - strand, within SMc01511 at 2618.992 kb on - strand, within SMc01511 at 2618.992 kb on - strand, within SMc01511 at 2618.992 kb on - strand, within SMc01511 at 2618.992 kb on - strand, within SMc01511 at 2618.992 kb on - strand, within SMc01511 at 2619.139 kb on + strand, within SMc01511 at 2619.139 kb on + strand, within SMc01511 at 2619.321 kb on + strand, within SMc01511 at 2619.478 kb on - strand, within SMc01511
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 2,616,725 + SMc01513 0.24 +0.7 2,616,932 + SMc01513 0.43 +1.9 2,616,938 - SMc01513 0.44 +0.2 2,616,938 - SMc01513 0.44 +0.5 2,616,938 - SMc01513 0.44 -4.2 2,616,938 - SMc01513 0.44 -0.4 2,617,793 + SMc01512 0.21 +1.7 2,617,793 + +0.8 2,617,793 + SMc01512 0.21 +0.8 2,617,793 + SMc01512 0.21 +3.1 2,617,793 + SMc01512 0.21 -1.7 2,617,880 + SMc01512 0.30 +0.3 2,617,880 + SMc01512 0.30 -1.7 2,618,018 + SMc01512 0.44 +0.5 2,618,018 + SMc01512 0.44 -1.3 2,618,018 + SMc01512 0.44 +0.8 2,618,018 + SMc01512 0.44 +0.4 2,618,019 - SMc01512 0.45 +0.9 2,618,239 + SMc01512 0.68 +2.5 2,618,288 + SMc01512 0.73 -2.1 2,618,516 + +0.6 2,618,991 + SMc01511 0.40 -0.5 2,618,991 + SMc01511 0.40 +0.8 2,618,991 + SMc01511 0.40 -0.0 2,618,991 + SMc01511 0.40 -2.0 2,618,991 + SMc01511 0.40 +1.6 2,618,992 - SMc01511 0.40 -1.2 2,618,992 - SMc01511 0.40 -3.3 2,618,992 - SMc01511 0.40 +1.2 2,618,992 - SMc01511 0.40 +0.8 2,618,992 - SMc01511 0.40 -0.4 2,618,992 - SMc01511 0.40 +2.3 2,618,992 - SMc01511 0.40 +1.8 2,619,139 + SMc01511 0.53 +1.6 2,619,139 + SMc01511 0.53 -0.2 2,619,321 + SMc01511 0.70 -1.2 2,619,478 - SMc01511 0.84 +0.6
Or see this region's nucleotide sequence