Strain Fitness in Sinorhizobium meliloti 1021 around SMc01450

Experiment: Polymyxin B sulfate 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01449 and SMc01450 are separated by 711 nucleotidesSMc01450 and SMc01451 are separated by 21 nucleotidesSMc01451 and SMc01452 are separated by 82 nucleotides SMc01449: SMc01449 - hypothetical protein, at 2,290,646 to 2,290,954 SMc01449 SMc01450: SMc01450 - hypothetical protein, at 2,291,666 to 2,292,181 SMc01450 SMc01451: SMc01451 - hypothetical protein, at 2,292,203 to 2,292,418 SMc01451 SMc01452: SMc01452 - hypothetical protein, at 2,292,501 to 2,292,743 SMc01452 Position (kb) 2291 2292 2293Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2290.689 kb on + strand, within SMc01449at 2290.689 kb on + strand, within SMc01449at 2290.690 kb on - strand, within SMc01449at 2290.690 kb on - strand, within SMc01449at 2290.690 kb on - strand, within SMc01449at 2290.690 kb on - strand, within SMc01449at 2290.856 kb on - strand, within SMc01449at 2290.923 kb on + strand, within SMc01449at 2290.924 kb on - strandat 2290.944 kb on + strandat 2290.944 kb on + strandat 2291.081 kb on - strandat 2291.486 kb on + strandat 2291.487 kb on - strandat 2291.488 kb on + strandat 2291.488 kb on + strandat 2291.488 kb on + strandat 2291.488 kb on + strandat 2291.488 kb on + strandat 2291.489 kb on - strandat 2291.514 kb on + strandat 2292.685 kb on + strand, within SMc01452at 2292.686 kb on - strand, within SMc01452at 2292.693 kb on + strand, within SMc01452at 2292.693 kb on + strand, within SMc01452at 2292.693 kb on + strand, within SMc01452at 2292.694 kb on - strand, within SMc01452at 2292.741 kb on + strandat 2292.742 kb on - strandat 2292.742 kb on - strandat 2292.794 kb on - strandat 2292.928 kb on - strandat 2292.928 kb on - strandat 2292.928 kb on - strandat 2292.928 kb on - strandat 2293.029 kb on + strandat 2293.029 kb on + strandat 2293.029 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml
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2,290,689 + SMc01449 0.14 +0.3
2,290,689 + SMc01449 0.14 +0.8
2,290,690 - SMc01449 0.14 +1.7
2,290,690 - SMc01449 0.14 -0.7
2,290,690 - SMc01449 0.14 -0.1
2,290,690 - SMc01449 0.14 +0.5
2,290,856 - SMc01449 0.68 +1.8
2,290,923 + SMc01449 0.90 -0.3
2,290,924 - +0.7
2,290,944 + -0.1
2,290,944 + -0.5
2,291,081 - -0.4
2,291,486 + +3.6
2,291,487 - +0.1
2,291,488 + -1.3
2,291,488 + -0.4
2,291,488 + +0.1
2,291,488 + -2.4
2,291,488 + -0.4
2,291,489 - +0.8
2,291,514 + -0.6
2,292,685 + SMc01452 0.76 +0.8
2,292,686 - SMc01452 0.76 -0.4
2,292,693 + SMc01452 0.79 +1.2
2,292,693 + SMc01452 0.79 -1.3
2,292,693 + SMc01452 0.79 +4.8
2,292,694 - SMc01452 0.79 -1.6
2,292,741 + -0.3
2,292,742 - +0.1
2,292,742 - +1.7
2,292,794 - +1.6
2,292,928 - +0.4
2,292,928 - -2.9
2,292,928 - -0.5
2,292,928 - +0.0
2,293,029 + +0.3
2,293,029 + -1.6
2,293,029 + -0.2

Or see this region's nucleotide sequence