Strain Fitness in Sinorhizobium meliloti 1021 around SMc01380

Experiment: Polymyxin B sulfate 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01268 and SMc01380 are separated by 158 nucleotidesSMc01380 and SMc01267 are separated by 584 nucleotides SMc01268: SMc01268 - lipoate-protein ligase B, at 1,505,829 to 1,506,587 SMc01268 SMc01380: SMc01380 - tRNA-Leu, at 1,506,746 to 1,506,830 SMc01380 SMc01267: SMc01267 - hypothetical protein, at 1,507,415 to 1,509,364 SMc01267 Position (kb) 1506 1507Strain fitness (log2 ratio) -2 -1 0 1 2at 1506.584 kb on - strandat 1506.584 kb on - strandat 1506.584 kb on - strandat 1506.584 kb on - strandat 1506.584 kb on - strandat 1506.834 kb on - strandat 1506.918 kb on + strandat 1506.933 kb on - strandat 1506.945 kb on - strandat 1507.139 kb on + strandat 1507.139 kb on + strandat 1507.262 kb on + strandat 1507.292 kb on - strandat 1507.460 kb on + strandat 1507.460 kb on + strandat 1507.461 kb on - strandat 1507.461 kb on - strandat 1507.461 kb on - strandat 1507.486 kb on - strandat 1507.486 kb on - strandat 1507.532 kb on + strandat 1507.532 kb on + strandat 1507.532 kb on + strandat 1507.533 kb on - strandat 1507.749 kb on - strand, within SMc01267at 1507.774 kb on + strand, within SMc01267at 1507.775 kb on - strand, within SMc01267at 1507.826 kb on + strand, within SMc01267at 1507.826 kb on + strand, within SMc01267

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml
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1,506,584 - -1.2
1,506,584 - -0.2
1,506,584 - +0.4
1,506,584 - -1.0
1,506,584 - -2.6
1,506,834 - -0.1
1,506,918 + +0.7
1,506,933 - -0.9
1,506,945 - -2.1
1,507,139 + +0.3
1,507,139 + +1.0
1,507,262 + +1.1
1,507,292 - +2.2
1,507,460 + -1.9
1,507,460 + -2.1
1,507,461 - +1.1
1,507,461 - -2.2
1,507,461 - +0.7
1,507,486 - +2.7
1,507,486 - +2.2
1,507,532 + +1.3
1,507,532 + -2.4
1,507,532 + +0.6
1,507,533 - +0.2
1,507,749 - SMc01267 0.17 +0.3
1,507,774 + SMc01267 0.18 -1.3
1,507,775 - SMc01267 0.18 +0.6
1,507,826 + SMc01267 0.21 -0.3
1,507,826 + SMc01267 0.21 +0.5

Or see this region's nucleotide sequence