Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00981 and SMc00980 are separated by 1 nucleotides SMc00980 and SMc00979 are separated by 295 nucleotides
SMc00981: SMc00981 - ferredoxin protein, at 956,324 to 957,418
SMc00981
SMc00980: SMc00980 - hypothetical protein, at 957,420 to 958,445
SMc00980
SMc00979: SMc00979 - hypothetical protein, at 958,741 to 959,154
SMc00979
Position (kb) 957
958
959 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 956.534 kb on + strand, within SMc00981 at 956.534 kb on + strand, within SMc00981 at 956.535 kb on - strand, within SMc00981 at 956.535 kb on - strand, within SMc00981 at 956.535 kb on - strand, within SMc00981 at 956.536 kb on + strand, within SMc00981 at 956.537 kb on - strand, within SMc00981 at 956.537 kb on - strand, within SMc00981 at 956.537 kb on - strand, within SMc00981 at 956.705 kb on + strand, within SMc00981 at 957.068 kb on + strand, within SMc00981 at 957.365 kb on + strand at 957.365 kb on + strand at 957.534 kb on + strand, within SMc00980 at 957.705 kb on + strand, within SMc00980 at 957.706 kb on - strand, within SMc00980 at 957.706 kb on - strand, within SMc00980 at 957.819 kb on - strand, within SMc00980 at 957.844 kb on + strand, within SMc00980 at 957.845 kb on - strand, within SMc00980 at 957.922 kb on + strand, within SMc00980 at 957.922 kb on + strand, within SMc00980 at 957.923 kb on - strand, within SMc00980 at 957.994 kb on + strand, within SMc00980 at 957.994 kb on + strand, within SMc00980 at 957.995 kb on - strand, within SMc00980 at 958.057 kb on + strand, within SMc00980 at 958.112 kb on - strand, within SMc00980 at 958.163 kb on - strand, within SMc00980 at 958.163 kb on - strand, within SMc00980 at 958.163 kb on - strand, within SMc00980 at 958.218 kb on - strand, within SMc00980 at 958.238 kb on + strand, within SMc00980 at 958.239 kb on - strand, within SMc00980 at 958.339 kb on + strand, within SMc00980 at 958.339 kb on + strand, within SMc00980 at 958.339 kb on + strand, within SMc00980 at 958.340 kb on - strand, within SMc00980 at 958.455 kb on + strand at 958.455 kb on + strand at 958.456 kb on - strand at 958.507 kb on - strand at 958.507 kb on - strand at 958.517 kb on - strand at 958.517 kb on - strand at 958.562 kb on - strand at 958.678 kb on - strand at 958.886 kb on - strand, within SMc00979 at 958.888 kb on + strand, within SMc00979 at 958.906 kb on + strand, within SMc00979 at 958.907 kb on - strand, within SMc00979 at 958.907 kb on - strand, within SMc00979 at 958.913 kb on - strand, within SMc00979 at 958.957 kb on + strand, within SMc00979 at 958.961 kb on - strand, within SMc00979 at 958.975 kb on + strand, within SMc00979 at 959.000 kb on + strand, within SMc00979 at 959.065 kb on + strand, within SMc00979 at 959.074 kb on + strand, within SMc00979 at 959.104 kb on + strand, within SMc00979 at 959.104 kb on + strand, within SMc00979 at 959.104 kb on + strand, within SMc00979 at 959.104 kb on + strand, within SMc00979 at 959.104 kb on + strand, within SMc00979 at 959.105 kb on - strand, within SMc00979 at 959.114 kb on - strand at 959.114 kb on - strand at 959.116 kb on - strand at 959.149 kb on - strand at 959.164 kb on + strand at 959.165 kb on - strand at 959.166 kb on + strand at 959.166 kb on + strand at 959.167 kb on - strand at 959.356 kb on + strand at 959.356 kb on + strand at 959.357 kb on - strand at 959.357 kb on - strand at 959.357 kb on - strand at 959.371 kb on + strand at 959.400 kb on + strand at 959.401 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 956,534 + SMc00981 0.19 +0.1 956,534 + SMc00981 0.19 -1.3 956,535 - SMc00981 0.19 +1.3 956,535 - SMc00981 0.19 -0.2 956,535 - SMc00981 0.19 -3.0 956,536 + SMc00981 0.19 -1.8 956,537 - SMc00981 0.19 -0.7 956,537 - SMc00981 0.19 -3.3 956,537 - SMc00981 0.19 -2.3 956,705 + SMc00981 0.35 -2.5 957,068 + SMc00981 0.68 -1.1 957,365 + -1.8 957,365 + -0.1 957,534 + SMc00980 0.11 -1.6 957,705 + SMc00980 0.28 -3.8 957,706 - SMc00980 0.28 -0.8 957,706 - SMc00980 0.28 -0.3 957,819 - SMc00980 0.39 +0.8 957,844 + SMc00980 0.41 +1.4 957,845 - SMc00980 0.41 +0.2 957,922 + SMc00980 0.49 +1.7 957,922 + SMc00980 0.49 +0.1 957,923 - SMc00980 0.49 -0.0 957,994 + SMc00980 0.56 +0.6 957,994 + SMc00980 0.56 -1.3 957,995 - SMc00980 0.56 -2.7 958,057 + SMc00980 0.62 -0.8 958,112 - SMc00980 0.67 +0.6 958,163 - SMc00980 0.72 +0.5 958,163 - SMc00980 0.72 +0.4 958,163 - SMc00980 0.72 +1.1 958,218 - SMc00980 0.78 -0.4 958,238 + SMc00980 0.80 +0.7 958,239 - SMc00980 0.80 +0.9 958,339 + SMc00980 0.90 +2.7 958,339 + SMc00980 0.90 +2.5 958,339 + SMc00980 0.90 -0.4 958,340 - SMc00980 0.90 -0.1 958,455 + -2.6 958,455 + -3.3 958,456 - +1.4 958,507 - +0.5 958,507 - -0.5 958,517 - +0.3 958,517 - +0.1 958,562 - -1.2 958,678 - -1.7 958,886 - SMc00979 0.35 -2.4 958,888 + SMc00979 0.36 -0.8 958,906 + SMc00979 0.40 -2.3 958,907 - SMc00979 0.40 -0.6 958,907 - SMc00979 0.40 +0.3 958,913 - SMc00979 0.42 -1.3 958,957 + SMc00979 0.52 -0.4 958,961 - SMc00979 0.53 -0.1 958,975 + SMc00979 0.57 +3.6 959,000 + SMc00979 0.63 +0.1 959,065 + SMc00979 0.78 -0.8 959,074 + SMc00979 0.80 +0.7 959,104 + SMc00979 0.88 -2.3 959,104 + SMc00979 0.88 -0.3 959,104 + SMc00979 0.88 -1.3 959,104 + SMc00979 0.88 +1.0 959,104 + SMc00979 0.88 -2.6 959,105 - SMc00979 0.88 -0.4 959,114 - +0.3 959,114 - -0.1 959,116 - +0.0 959,149 - -3.6 959,164 + -2.4 959,165 - +1.1 959,166 + +5.1 959,166 + -3.8 959,167 - -0.3 959,356 + +0.3 959,356 + -1.2 959,357 - +0.1 959,357 - +1.4 959,357 - -2.9 959,371 + -2.0 959,400 + -0.8 959,401 - -1.3
Or see this region's nucleotide sequence