Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00938 and SMc00957 are separated by 22 nucleotides SMc00957 and SMc00939 are separated by 67 nucleotides SMc00939 and SMc00940 are separated by 205 nucleotides SMc00940 and SMc00941 are separated by 491 nucleotides SMc00941 and SMc00942 are separated by 88 nucleotides
SMc00938: SMc00938 - hypothetical protein, at 1,767,233 to 1,767,823
SMc00938
SMc00957: SMc00957 - tRNA-Leu, at 1,767,846 to 1,767,928
SMc00957
SMc00939: SMc00939 - hypothetical protein, at 1,767,996 to 1,768,385
SMc00939
SMc00940: SMc00940 - hypothetical protein, at 1,768,591 to 1,768,842
SMc00940
SMc00941: SMc00941 - hypothetical protein, at 1,769,334 to 1,769,552
SMc00941
SMc00942: SMc00942 - hypothetical protein, at 1,769,641 to 1,769,883
SMc00942
Position (kb)
1768
1769 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1767.695 kb on + strand, within SMc00938 at 1767.696 kb on - strand, within SMc00938 at 1767.696 kb on - strand, within SMc00938 at 1767.740 kb on + strand, within SMc00938 at 1767.740 kb on + strand, within SMc00938 at 1767.938 kb on - strand at 1767.938 kb on - strand at 1768.066 kb on + strand, within SMc00939 at 1768.066 kb on + strand, within SMc00939 at 1768.067 kb on - strand, within SMc00939 at 1768.067 kb on - strand, within SMc00939 at 1768.068 kb on + strand, within SMc00939 at 1768.069 kb on - strand, within SMc00939 at 1768.371 kb on + strand at 1768.379 kb on - strand at 1768.379 kb on - strand at 1768.379 kb on - strand at 1768.407 kb on + strand at 1768.408 kb on - strand at 1768.500 kb on + strand at 1768.501 kb on - strand at 1768.501 kb on - strand at 1768.537 kb on + strand at 1768.826 kb on + strand at 1768.827 kb on - strand at 1768.827 kb on - strand at 1769.002 kb on + strand at 1769.002 kb on + strand at 1769.002 kb on + strand at 1769.036 kb on + strand at 1769.036 kb on + strand at 1769.079 kb on + strand at 1769.080 kb on - strand at 1769.080 kb on - strand at 1769.202 kb on - strand at 1769.341 kb on + strand at 1769.341 kb on + strand at 1769.341 kb on + strand at 1769.344 kb on + strand at 1769.344 kb on + strand at 1769.345 kb on - strand at 1769.345 kb on - strand at 1769.528 kb on + strand, within SMc00941 at 1769.545 kb on + strand at 1769.545 kb on + strand at 1769.545 kb on + strand at 1769.545 kb on + strand at 1769.545 kb on + strand at 1769.545 kb on + strand at 1769.545 kb on + strand at 1769.545 kb on + strand at 1769.545 kb on + strand at 1769.546 kb on - strand at 1769.546 kb on - strand at 1769.593 kb on + strand at 1769.594 kb on - strand at 1769.654 kb on - strand at 1769.817 kb on - strand, within SMc00942
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 1,767,695 + SMc00938 0.78 +1.9 1,767,696 - SMc00938 0.78 +0.1 1,767,696 - SMc00938 0.78 +0.9 1,767,740 + SMc00938 0.86 -1.2 1,767,740 + SMc00938 0.86 +1.3 1,767,938 - -2.1 1,767,938 - +0.8 1,768,066 + SMc00939 0.18 +0.9 1,768,066 + SMc00939 0.18 -1.7 1,768,067 - SMc00939 0.18 +1.0 1,768,067 - SMc00939 0.18 +1.1 1,768,068 + SMc00939 0.18 +0.7 1,768,069 - SMc00939 0.19 -0.0 1,768,371 + -1.0 1,768,379 - +0.3 1,768,379 - -1.6 1,768,379 - -0.7 1,768,407 + -2.1 1,768,408 - -1.2 1,768,500 + -1.1 1,768,501 - +1.2 1,768,501 - -3.3 1,768,537 + -1.1 1,768,826 + -2.2 1,768,827 - -2.9 1,768,827 - -0.2 1,769,002 + -1.9 1,769,002 + +0.4 1,769,002 + -3.2 1,769,036 + -0.6 1,769,036 + +2.1 1,769,079 + -2.7 1,769,080 - +0.4 1,769,080 - +0.8 1,769,202 - +0.1 1,769,341 + +2.8 1,769,341 + -0.6 1,769,341 + -2.9 1,769,344 + -1.0 1,769,344 + +1.3 1,769,345 - +1.6 1,769,345 - +1.0 1,769,528 + SMc00941 0.89 +0.5 1,769,545 + +0.2 1,769,545 + +1.3 1,769,545 + +1.1 1,769,545 + -1.0 1,769,545 + +0.4 1,769,545 + +0.8 1,769,545 + -2.5 1,769,545 + +0.8 1,769,545 + +0.0 1,769,546 - +2.6 1,769,546 - +0.2 1,769,593 + +0.8 1,769,594 - -1.8 1,769,654 - +0.4 1,769,817 - SMc00942 0.72 +0.2
Or see this region's nucleotide sequence