Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00881 and SMc00880 overlap by 4 nucleotides SMc00880 and SMc00879 are separated by 125 nucleotides SMc00879 and SMc00878 are separated by 227 nucleotides
SMc00881: SMc00881 - 2-dehydro-3-deoxygalactonokinase, at 905,344 to 906,264
SMc00881
SMc00880: SMc00880 - oxidoreductase, at 906,261 to 907,031
SMc00880
SMc00879: SMc00879 - transcriptional regulator, at 907,157 to 908,011
SMc00879
SMc00878: SMc00878 - transcriptional regulator, at 908,239 to 908,979
SMc00878
Position (kb) 907
908
909 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 906.245 kb on + strand at 906.249 kb on - strand at 906.476 kb on + strand, within SMc00880 at 906.477 kb on - strand, within SMc00880 at 906.564 kb on - strand, within SMc00880 at 906.957 kb on + strand at 907.122 kb on - strand at 907.122 kb on - strand at 907.134 kb on + strand at 907.278 kb on + strand, within SMc00879 at 907.278 kb on + strand, within SMc00879 at 907.279 kb on - strand, within SMc00879 at 907.374 kb on - strand, within SMc00879 at 907.451 kb on + strand, within SMc00879 at 907.524 kb on - strand, within SMc00879 at 907.559 kb on - strand, within SMc00879 at 907.559 kb on - strand, within SMc00879 at 907.593 kb on - strand, within SMc00879 at 907.725 kb on + strand, within SMc00879 at 907.726 kb on - strand, within SMc00879 at 907.856 kb on + strand, within SMc00879 at 907.857 kb on - strand, within SMc00879 at 907.857 kb on - strand, within SMc00879 at 908.025 kb on + strand at 908.025 kb on - strand at 908.070 kb on - strand at 908.106 kb on + strand at 908.106 kb on + strand at 908.106 kb on + strand at 908.106 kb on + strand at 908.106 kb on + strand at 908.106 kb on + strand at 908.107 kb on - strand at 908.107 kb on - strand at 908.107 kb on - strand at 908.110 kb on + strand at 908.181 kb on + strand at 908.182 kb on - strand at 908.259 kb on + strand at 908.259 kb on + strand at 908.260 kb on - strand at 908.260 kb on - strand at 908.260 kb on - strand at 908.260 kb on - strand at 908.261 kb on + strand at 908.261 kb on + strand at 908.261 kb on + strand at 908.261 kb on + strand at 908.261 kb on + strand at 908.262 kb on - strand at 908.533 kb on + strand, within SMc00878 at 908.533 kb on + strand, within SMc00878 at 908.533 kb on + strand, within SMc00878 at 908.588 kb on + strand, within SMc00878 at 908.588 kb on + strand, within SMc00878 at 908.588 kb on + strand, within SMc00878 at 908.589 kb on - strand, within SMc00878 at 908.589 kb on - strand, within SMc00878 at 908.589 kb on - strand, within SMc00878 at 908.589 kb on - strand, within SMc00878 at 908.627 kb on - strand, within SMc00878 at 908.627 kb on - strand, within SMc00878 at 908.738 kb on + strand, within SMc00878 at 908.738 kb on + strand, within SMc00878 at 908.738 kb on + strand, within SMc00878 at 908.738 kb on + strand at 908.738 kb on + strand, within SMc00878 at 908.738 kb on + strand, within SMc00878 at 908.739 kb on - strand, within SMc00878 at 908.739 kb on - strand, within SMc00878 at 908.739 kb on - strand, within SMc00878 at 908.739 kb on - strand, within SMc00878 at 908.739 kb on - strand, within SMc00878 at 908.740 kb on + strand, within SMc00878 at 908.741 kb on - strand, within SMc00878 at 908.741 kb on - strand, within SMc00878 at 908.879 kb on - strand, within SMc00878 at 908.880 kb on + strand, within SMc00878 at 908.880 kb on + strand, within SMc00878 at 908.881 kb on - strand, within SMc00878 at 908.893 kb on + strand, within SMc00878 at 908.894 kb on - strand, within SMc00878 at 908.957 kb on + strand at 908.957 kb on + strand at 908.958 kb on - strand at 908.997 kb on + strand at 908.997 kb on + strand at 908.998 kb on - strand at 908.998 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 906,245 + +0.9 906,249 - +0.5 906,476 + SMc00880 0.28 -1.3 906,477 - SMc00880 0.28 +3.0 906,564 - SMc00880 0.39 -0.8 906,957 + -0.2 907,122 - +1.0 907,122 - +1.0 907,134 + -0.9 907,278 + SMc00879 0.14 -3.2 907,278 + SMc00879 0.14 -1.2 907,279 - SMc00879 0.14 +2.0 907,374 - SMc00879 0.25 -2.4 907,451 + SMc00879 0.34 +0.1 907,524 - SMc00879 0.43 -2.5 907,559 - SMc00879 0.47 +0.0 907,559 - SMc00879 0.47 -0.2 907,593 - SMc00879 0.51 -3.3 907,725 + SMc00879 0.66 -0.4 907,726 - SMc00879 0.67 -1.6 907,856 + SMc00879 0.82 -2.8 907,857 - SMc00879 0.82 +1.3 907,857 - SMc00879 0.82 -1.0 908,025 + +0.1 908,025 - -1.6 908,070 - +0.2 908,106 + +0.9 908,106 + -0.2 908,106 + +0.1 908,106 + -0.3 908,106 + +1.1 908,106 + -3.1 908,107 - -0.6 908,107 - +0.4 908,107 - -0.6 908,110 + +1.2 908,181 + -0.1 908,182 - -1.2 908,259 + -1.4 908,259 + +3.2 908,260 - +1.0 908,260 - +3.9 908,260 - +2.3 908,260 - +1.2 908,261 + -0.4 908,261 + +0.6 908,261 + -0.8 908,261 + +0.1 908,261 + -3.4 908,262 - +0.1 908,533 + SMc00878 0.40 -1.6 908,533 + SMc00878 0.40 -1.9 908,533 + SMc00878 0.40 -2.7 908,588 + SMc00878 0.47 +0.1 908,588 + SMc00878 0.47 +0.3 908,588 + SMc00878 0.47 +1.1 908,589 - SMc00878 0.47 -1.2 908,589 - SMc00878 0.47 +0.4 908,589 - SMc00878 0.47 +0.6 908,589 - SMc00878 0.47 +0.2 908,627 - SMc00878 0.52 +0.9 908,627 - SMc00878 0.52 +1.8 908,738 + SMc00878 0.67 +0.3 908,738 + SMc00878 0.67 +1.5 908,738 + SMc00878 0.67 -0.6 908,738 + +1.8 908,738 + SMc00878 0.67 -0.8 908,738 + SMc00878 0.67 +1.5 908,739 - SMc00878 0.67 +0.1 908,739 - SMc00878 0.67 -0.1 908,739 - SMc00878 0.67 -0.8 908,739 - SMc00878 0.67 -1.6 908,739 - SMc00878 0.67 +1.1 908,740 + SMc00878 0.68 -0.0 908,741 - SMc00878 0.68 -2.8 908,741 - SMc00878 0.68 -0.8 908,879 - SMc00878 0.86 +2.7 908,880 + SMc00878 0.87 -0.2 908,880 + SMc00878 0.87 -0.4 908,881 - SMc00878 0.87 +1.1 908,893 + SMc00878 0.88 +0.0 908,894 - SMc00878 0.88 +0.6 908,957 + -0.8 908,957 + -1.7 908,958 - +0.5 908,997 + -2.4 908,997 + -1.6 908,998 - -0.8 908,998 - +0.5
Or see this region's nucleotide sequence