Strain Fitness in Sinorhizobium meliloti 1021 around SMc00862

Experiment: Polymyxin B sulfate 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00863 and SMc00862 are separated by 7 nucleotidesSMc00862 and SMc00861 are separated by 7 nucleotides SMc00863: SMc00863 - molybdenum cofactor biosynthesis protein B, at 923,950 to 924,492 SMc00863 SMc00862: SMc00862 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, at 924,500 to 925,405 SMc00862 SMc00861: SMc00861 - signal peptide protein, at 925,413 to 927,242 SMc00861 Position (kb) 924 925 926Strain fitness (log2 ratio) -2 -1 0 1 2 3at 923.506 kb on + strandat 923.640 kb on + strandat 923.793 kb on + strandat 923.793 kb on + strandat 923.793 kb on + strandat 923.854 kb on - strandat 924.017 kb on + strand, within SMc00863at 924.314 kb on + strand, within SMc00863at 924.314 kb on + strand, within SMc00863at 924.314 kb on + strand, within SMc00863at 924.314 kb on + strand, within SMc00863at 924.377 kb on - strand, within SMc00863

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml
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923,506 + +0.6
923,640 + -0.0
923,793 + -0.2
923,793 + +0.3
923,793 + -1.7
923,854 - -1.9
924,017 + SMc00863 0.12 +0.7
924,314 + SMc00863 0.67 +0.0
924,314 + SMc00863 0.67 +3.6
924,314 + SMc00863 0.67 -0.2
924,314 + SMc00863 0.67 +0.0
924,377 - SMc00863 0.79 +0.9

Or see this region's nucleotide sequence