Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00855 and SMc00854 are separated by 0 nucleotides SMc00854 and SMc00853 are separated by 227 nucleotides SMc00853 and SMc00852 are separated by 119 nucleotides
SMc00855: SMc00855 - glycyl-tRNA synthetase subunit alpha, at 931,119 to 932,054
SMc00855
SMc00854: SMc00854 - hypothetical protein, at 932,055 to 932,300
SMc00854
SMc00853: SMc00853 - hypothetical protein, at 932,528 to 933,076
SMc00853
SMc00852: SMc00852 - transmembrane signal peptide protein, at 933,196 to 935,130
SMc00852
Position (kb) 932
933
934 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 932.185 kb on + strand, within SMc00854 at 932.186 kb on - strand, within SMc00854 at 932.311 kb on - strand at 932.311 kb on - strand at 932.334 kb on + strand at 932.334 kb on + strand at 932.335 kb on - strand at 932.335 kb on - strand at 932.335 kb on - strand at 932.340 kb on - strand at 932.340 kb on - strand at 932.564 kb on + strand at 932.581 kb on + strand at 932.732 kb on - strand, within SMc00853 at 932.933 kb on + strand, within SMc00853 at 933.024 kb on - strand at 933.074 kb on + strand at 933.107 kb on - strand at 933.283 kb on + strand at 933.379 kb on + strand at 933.379 kb on + strand at 933.379 kb on + strand at 933.479 kb on - strand, within SMc00852 at 933.514 kb on + strand, within SMc00852 at 933.515 kb on - strand, within SMc00852 at 933.571 kb on + strand, within SMc00852 at 933.572 kb on - strand, within SMc00852 at 933.572 kb on - strand, within SMc00852 at 933.572 kb on - strand, within SMc00852 at 933.590 kb on + strand, within SMc00852 at 933.590 kb on + strand, within SMc00852 at 933.619 kb on + strand, within SMc00852 at 933.619 kb on + strand, within SMc00852 at 933.620 kb on - strand, within SMc00852 at 933.620 kb on - strand, within SMc00852 at 933.711 kb on - strand, within SMc00852 at 933.882 kb on + strand, within SMc00852 at 933.949 kb on + strand, within SMc00852 at 933.949 kb on + strand, within SMc00852 at 934.051 kb on + strand, within SMc00852 at 934.051 kb on + strand, within SMc00852 at 934.052 kb on - strand, within SMc00852 at 934.052 kb on - strand, within SMc00852 at 934.052 kb on - strand, within SMc00852
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 932,185 + SMc00854 0.53 -3.2 932,186 - SMc00854 0.53 -0.7 932,311 - -2.3 932,311 - -0.1 932,334 + -1.1 932,334 + -1.4 932,335 - +1.8 932,335 - +0.6 932,335 - +1.4 932,340 - +0.4 932,340 - -0.6 932,564 + -3.7 932,581 + -0.6 932,732 - SMc00853 0.37 +2.1 932,933 + SMc00853 0.74 +0.1 933,024 - +1.8 933,074 + -1.1 933,107 - +0.3 933,283 + +1.2 933,379 + +1.6 933,379 + +1.6 933,379 + +0.5 933,479 - SMc00852 0.15 +0.5 933,514 + SMc00852 0.16 -1.4 933,515 - SMc00852 0.16 +1.8 933,571 + SMc00852 0.19 +0.5 933,572 - SMc00852 0.19 +0.2 933,572 - SMc00852 0.19 -2.6 933,572 - SMc00852 0.19 -0.5 933,590 + SMc00852 0.20 +1.7 933,590 + SMc00852 0.20 -0.1 933,619 + SMc00852 0.22 +1.1 933,619 + SMc00852 0.22 +0.1 933,620 - SMc00852 0.22 +0.2 933,620 - SMc00852 0.22 +1.0 933,711 - SMc00852 0.27 +0.8 933,882 + SMc00852 0.35 -0.4 933,949 + SMc00852 0.39 +0.3 933,949 + SMc00852 0.39 -2.9 934,051 + SMc00852 0.44 +2.3 934,051 + SMc00852 0.44 -0.5 934,052 - SMc00852 0.44 -0.2 934,052 - SMc00852 0.44 +0.0 934,052 - SMc00852 0.44 +0.9
Or see this region's nucleotide sequence