Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00830 and SMc00831 are separated by 1 nucleotides SMc00831 and SMc00832 are separated by 199 nucleotides
SMc00830: SMc00830 - hypothetical protein, at 851,078 to 852,346
SMc00830
SMc00831: SMc00831 - transcriptional regulator, at 852,348 to 853,244
SMc00831
SMc00832: SMc00832 - D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) <small>(from data)</small>, at 853,444 to 854,883
SMc00832
Position (kb) 852
853
854 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 851.351 kb on + strand, within SMc00830 at 851.351 kb on + strand, within SMc00830 at 851.351 kb on - strand, within SMc00830 at 851.352 kb on - strand, within SMc00830 at 851.352 kb on - strand, within SMc00830 at 851.474 kb on - strand, within SMc00830 at 851.525 kb on + strand, within SMc00830 at 851.672 kb on + strand, within SMc00830 at 851.885 kb on + strand, within SMc00830 at 851.886 kb on - strand, within SMc00830 at 851.886 kb on - strand, within SMc00830 at 851.886 kb on - strand, within SMc00830 at 851.889 kb on - strand, within SMc00830 at 851.889 kb on - strand, within SMc00830 at 851.889 kb on - strand, within SMc00830 at 851.889 kb on - strand, within SMc00830 at 851.942 kb on + strand, within SMc00830 at 852.050 kb on - strand, within SMc00830 at 852.189 kb on - strand, within SMc00830 at 852.189 kb on - strand, within SMc00830 at 852.192 kb on - strand, within SMc00830 at 852.344 kb on + strand at 852.349 kb on + strand at 852.349 kb on + strand at 852.349 kb on + strand at 852.350 kb on - strand at 852.350 kb on - strand at 852.350 kb on - strand at 852.361 kb on + strand at 852.361 kb on + strand at 852.376 kb on + strand at 852.733 kb on + strand, within SMc00831 at 852.734 kb on - strand, within SMc00831 at 853.000 kb on + strand, within SMc00831 at 853.000 kb on + strand, within SMc00831 at 853.000 kb on + strand, within SMc00831 at 853.001 kb on - strand, within SMc00831 at 853.001 kb on - strand, within SMc00831 at 853.001 kb on - strand, within SMc00831 at 853.048 kb on + strand, within SMc00831 at 853.048 kb on + strand, within SMc00831 at 853.048 kb on + strand, within SMc00831 at 853.049 kb on - strand, within SMc00831 at 853.049 kb on - strand, within SMc00831 at 853.190 kb on + strand at 853.190 kb on + strand at 853.191 kb on - strand at 853.191 kb on - strand at 853.191 kb on - strand at 853.311 kb on - strand at 853.312 kb on + strand at 853.313 kb on - strand at 853.313 kb on - strand at 853.352 kb on + strand at 853.352 kb on + strand at 853.352 kb on + strand at 853.353 kb on - strand at 853.353 kb on - strand at 853.353 kb on - strand at 853.663 kb on + strand, within SMc00832 at 853.663 kb on + strand, within SMc00832 at 853.663 kb on + strand, within SMc00832 at 853.676 kb on - strand, within SMc00832 at 853.839 kb on + strand, within SMc00832 at 853.873 kb on + strand, within SMc00832 at 853.910 kb on + strand, within SMc00832 at 853.958 kb on - strand, within SMc00832 at 853.958 kb on - strand, within SMc00832 at 853.965 kb on + strand, within SMc00832 at 854.053 kb on + strand, within SMc00832
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 851,351 + SMc00830 0.22 +2.6 851,351 + SMc00830 0.22 -1.7 851,351 - SMc00830 0.22 -0.9 851,352 - SMc00830 0.22 -3.0 851,352 - SMc00830 0.22 -0.2 851,474 - SMc00830 0.31 +0.7 851,525 + SMc00830 0.35 +0.2 851,672 + SMc00830 0.47 -0.0 851,885 + SMc00830 0.64 +0.2 851,886 - SMc00830 0.64 +2.8 851,886 - SMc00830 0.64 -0.1 851,886 - SMc00830 0.64 -2.0 851,889 - SMc00830 0.64 +0.1 851,889 - SMc00830 0.64 +1.6 851,889 - SMc00830 0.64 -1.1 851,889 - SMc00830 0.64 +1.9 851,942 + SMc00830 0.68 +3.2 852,050 - SMc00830 0.77 +1.5 852,189 - SMc00830 0.88 +2.4 852,189 - SMc00830 0.88 +4.7 852,192 - SMc00830 0.88 -2.7 852,344 + +1.1 852,349 + +0.8 852,349 + -0.4 852,349 + +2.8 852,350 - -3.7 852,350 - +0.4 852,350 - +0.0 852,361 + -0.7 852,361 + +1.0 852,376 + -1.2 852,733 + SMc00831 0.43 -2.0 852,734 - SMc00831 0.43 -2.0 853,000 + SMc00831 0.73 -0.8 853,000 + SMc00831 0.73 -1.3 853,000 + SMc00831 0.73 +1.4 853,001 - SMc00831 0.73 +1.1 853,001 - SMc00831 0.73 -3.9 853,001 - SMc00831 0.73 +0.8 853,048 + SMc00831 0.78 +0.8 853,048 + SMc00831 0.78 -0.1 853,048 + SMc00831 0.78 -0.2 853,049 - SMc00831 0.78 -1.0 853,049 - SMc00831 0.78 -0.8 853,190 + -0.5 853,190 + -0.1 853,191 - -3.6 853,191 - -2.2 853,191 - -1.9 853,311 - -1.3 853,312 + -1.7 853,313 - +0.3 853,313 - +0.0 853,352 + -4.8 853,352 + -0.1 853,352 + +1.1 853,353 - +0.0 853,353 - +0.4 853,353 - +0.1 853,663 + SMc00832 0.15 -2.0 853,663 + SMc00832 0.15 -1.1 853,663 + SMc00832 0.15 -0.2 853,676 - SMc00832 0.16 +1.2 853,839 + SMc00832 0.27 +0.8 853,873 + SMc00832 0.30 +0.6 853,910 + SMc00832 0.32 +0.8 853,958 - SMc00832 0.36 +3.5 853,958 - SMc00832 0.36 +0.2 853,965 + SMc00832 0.36 -1.2 854,053 + SMc00832 0.42 -1.6
Or see this region's nucleotide sequence