Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00789 and SMc00790 overlap by 4 nucleotides SMc00790 and SMc00791 are separated by 64 nucleotides SMc00791 and SMc00792 are separated by 152 nucleotides SMc00792 and SMc00793 are separated by 101 nucleotides
SMc00789: SMc00789 - peptide ABC transporter ATP-binding protein, at 811,111 to 811,965
SMc00789
SMc00790: SMc00790 - peptide ABC transporter ATP-binding protein, at 811,962 to 812,789
SMc00790
SMc00791: SMc00791 - hypothetical protein, at 812,854 to 813,198
SMc00791
SMc00792: SMc00792 - hypothetical protein, at 813,351 to 813,521
SMc00792
SMc00793: SMc00793 - permease, at 813,623 to 814,753
SMc00793
Position (kb) 812
813
814 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 811.855 kb on + strand, within SMc00789 at 812.001 kb on + strand at 812.059 kb on + strand, within SMc00790 at 812.059 kb on + strand, within SMc00790 at 812.123 kb on + strand, within SMc00790 at 812.124 kb on - strand, within SMc00790 at 812.124 kb on - strand, within SMc00790 at 812.400 kb on + strand, within SMc00790 at 812.400 kb on + strand, within SMc00790 at 812.524 kb on + strand, within SMc00790 at 812.525 kb on - strand, within SMc00790 at 812.580 kb on + strand, within SMc00790 at 812.580 kb on + strand, within SMc00790 at 812.580 kb on + strand, within SMc00790 at 812.581 kb on - strand, within SMc00790 at 812.581 kb on - strand, within SMc00790 at 812.581 kb on - strand, within SMc00790 at 812.581 kb on - strand, within SMc00790 at 812.581 kb on - strand, within SMc00790 at 812.581 kb on - strand, within SMc00790 at 812.616 kb on + strand, within SMc00790 at 812.616 kb on + strand, within SMc00790 at 812.616 kb on + strand, within SMc00790 at 812.632 kb on + strand, within SMc00790 at 812.632 kb on + strand, within SMc00790 at 812.633 kb on - strand, within SMc00790 at 812.643 kb on + strand, within SMc00790 at 812.643 kb on + strand, within SMc00790 at 812.644 kb on - strand, within SMc00790 at 812.644 kb on - strand, within SMc00790 at 812.644 kb on - strand, within SMc00790 at 812.664 kb on + strand, within SMc00790 at 812.665 kb on - strand, within SMc00790 at 812.707 kb on - strand at 812.708 kb on + strand at 812.708 kb on + strand at 812.708 kb on + strand at 812.709 kb on - strand at 812.709 kb on - strand at 812.797 kb on + strand at 812.797 kb on + strand at 812.798 kb on - strand at 812.798 kb on - strand at 812.798 kb on - strand at 812.798 kb on - strand at 812.798 kb on - strand at 812.801 kb on + strand at 812.801 kb on + strand at 812.838 kb on + strand at 812.839 kb on - strand at 812.905 kb on + strand, within SMc00791 at 812.905 kb on + strand, within SMc00791 at 813.164 kb on - strand at 813.218 kb on + strand at 813.219 kb on - strand at 813.219 kb on - strand at 813.220 kb on + strand at 813.220 kb on + strand at 813.220 kb on + strand at 813.220 kb on + strand at 813.220 kb on + strand at 813.221 kb on - strand at 813.221 kb on - strand at 813.221 kb on - strand at 813.221 kb on - strand at 813.278 kb on - strand at 813.321 kb on - strand at 813.357 kb on + strand at 813.401 kb on - strand, within SMc00792 at 813.401 kb on - strand, within SMc00792 at 813.401 kb on - strand, within SMc00792 at 813.445 kb on - strand, within SMc00792 at 813.445 kb on - strand, within SMc00792 at 813.445 kb on - strand, within SMc00792 at 813.614 kb on + strand at 813.614 kb on + strand at 813.614 kb on + strand at 813.614 kb on + strand at 813.614 kb on + strand at 813.615 kb on - strand at 813.794 kb on + strand, within SMc00793 at 813.794 kb on + strand, within SMc00793 at 813.795 kb on - strand at 813.797 kb on - strand, within SMc00793 at 813.797 kb on - strand, within SMc00793 at 813.797 kb on - strand, within SMc00793 at 813.922 kb on - strand, within SMc00793 at 814.026 kb on + strand, within SMc00793 at 814.035 kb on - strand, within SMc00793 at 814.063 kb on - strand, within SMc00793 at 814.063 kb on - strand, within SMc00793 at 814.197 kb on + strand, within SMc00793 at 814.198 kb on - strand, within SMc00793
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 811,855 + SMc00789 0.87 +0.8 812,001 + -0.7 812,059 + SMc00790 0.12 -0.5 812,059 + SMc00790 0.12 +0.1 812,123 + SMc00790 0.19 -0.1 812,124 - SMc00790 0.20 -0.5 812,124 - SMc00790 0.20 -0.5 812,400 + SMc00790 0.53 +0.8 812,400 + SMc00790 0.53 +1.1 812,524 + SMc00790 0.68 +0.0 812,525 - SMc00790 0.68 +0.1 812,580 + SMc00790 0.75 -2.5 812,580 + SMc00790 0.75 +0.8 812,580 + SMc00790 0.75 -1.5 812,581 - SMc00790 0.75 -1.7 812,581 - SMc00790 0.75 -1.0 812,581 - SMc00790 0.75 -2.6 812,581 - SMc00790 0.75 -1.5 812,581 - SMc00790 0.75 +0.3 812,581 - SMc00790 0.75 +3.1 812,616 + SMc00790 0.79 -0.8 812,616 + SMc00790 0.79 -1.7 812,616 + SMc00790 0.79 +0.1 812,632 + SMc00790 0.81 -1.2 812,632 + SMc00790 0.81 -0.1 812,633 - SMc00790 0.81 +0.9 812,643 + SMc00790 0.82 -3.1 812,643 + SMc00790 0.82 -3.4 812,644 - SMc00790 0.82 +0.5 812,644 - SMc00790 0.82 -2.9 812,644 - SMc00790 0.82 -0.2 812,664 + SMc00790 0.85 -0.0 812,665 - SMc00790 0.85 -0.2 812,707 - +0.8 812,708 + +1.6 812,708 + -0.8 812,708 + -0.3 812,709 - +0.5 812,709 - +1.0 812,797 + +0.3 812,797 + -0.4 812,798 - +1.9 812,798 - -2.8 812,798 - +0.7 812,798 - -0.2 812,798 - +1.2 812,801 + +0.5 812,801 + +0.6 812,838 + -2.8 812,839 - -1.1 812,905 + SMc00791 0.15 -1.5 812,905 + SMc00791 0.15 +1.4 813,164 - +0.3 813,218 + +1.4 813,219 - +2.0 813,219 - -1.1 813,220 + +0.4 813,220 + +1.0 813,220 + +4.3 813,220 + +2.5 813,220 + +1.6 813,221 - -1.5 813,221 - +0.1 813,221 - +0.8 813,221 - -2.7 813,278 - -0.8 813,321 - -1.5 813,357 + +3.8 813,401 - SMc00792 0.29 -1.6 813,401 - SMc00792 0.29 -0.6 813,401 - SMc00792 0.29 -0.8 813,445 - SMc00792 0.55 -0.5 813,445 - SMc00792 0.55 +2.8 813,445 - SMc00792 0.55 -0.8 813,614 + +0.4 813,614 + -2.2 813,614 + +0.4 813,614 + +1.0 813,614 + -1.3 813,615 - -0.8 813,794 + SMc00793 0.15 -0.3 813,794 + SMc00793 0.15 +1.9 813,795 - +0.8 813,797 - SMc00793 0.15 +0.2 813,797 - SMc00793 0.15 -1.5 813,797 - SMc00793 0.15 +2.8 813,922 - SMc00793 0.26 -2.0 814,026 + SMc00793 0.36 -2.7 814,035 - SMc00793 0.36 -0.2 814,063 - SMc00793 0.39 +0.5 814,063 - SMc00793 0.39 -0.6 814,197 + SMc00793 0.51 +0.1 814,198 - SMc00793 0.51 -0.5
Or see this region's nucleotide sequence