Strain Fitness in Sinorhizobium meliloti 1021 around SMc00579

Experiment: Polymyxin B sulfate 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00577 and SMc00578 are separated by 62 nucleotidesSMc00578 and SMc00579 are separated by 221 nucleotidesSMc00579 and SMc00580 overlap by 1 nucleotides SMc00577: SMc00577 - guanylate kinase, at 1,247,182 to 1,247,841 SMc00577 SMc00578: SMc00578 - hypothetical protein, at 1,247,904 to 1,248,032 SMc00578 SMc00579: SMc00579 - dimethyladenosine transferase, at 1,248,254 to 1,249,078 SMc00579 SMc00580: SMc00580 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 1,249,078 to 1,250,106 SMc00580 Position (kb) 1248 1249 1250Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1248.057 kb on - strandat 1248.111 kb on - strandat 1248.111 kb on - strandat 1248.574 kb on - strand, within SMc00579at 1248.574 kb on - strand, within SMc00579at 1248.574 kb on - strand, within SMc00579at 1248.895 kb on + strand, within SMc00579at 1248.895 kb on + strand, within SMc00579at 1249.308 kb on - strand, within SMc00580at 1249.536 kb on - strand, within SMc00580at 1249.582 kb on - strand, within SMc00580at 1249.982 kb on - strand, within SMc00580at 1249.985 kb on + strand, within SMc00580at 1249.986 kb on - strand, within SMc00580at 1249.986 kb on - strand, within SMc00580at 1250.026 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml
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1,248,057 - -0.2
1,248,111 - -2.7
1,248,111 - +0.3
1,248,574 - SMc00579 0.39 -2.7
1,248,574 - SMc00579 0.39 +4.3
1,248,574 - SMc00579 0.39 -1.6
1,248,895 + SMc00579 0.78 -1.5
1,248,895 + SMc00579 0.78 -2.2
1,249,308 - SMc00580 0.22 -2.6
1,249,536 - SMc00580 0.45 -1.7
1,249,582 - SMc00580 0.49 -0.8
1,249,982 - SMc00580 0.88 +1.3
1,249,985 + SMc00580 0.88 -2.0
1,249,986 - SMc00580 0.88 -0.8
1,249,986 - SMc00580 0.88 -0.8
1,250,026 + -2.4

Or see this region's nucleotide sequence