Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00391 and SMc00392 are separated by 43 nucleotides SMc00392 and SMc00393 overlap by 1 nucleotides SMc00393 and SMc00394 are separated by 29 nucleotides SMc00394 and SMc00395 are separated by 106 nucleotides SMc00395 and SMc00396 overlap by 4 nucleotides
SMc00391: SMc00391 - hypothetical protein, at 343,024 to 343,218
SMc00391
SMc00392: SMc00392 - hypothetical protein, at 343,262 to 343,504
SMc00392
SMc00393: SMc00393 - hypothetical protein, at 343,504 to 343,929
SMc00393
SMc00394: SMc00394 - GMP synthase, at 343,959 to 345,521
SMc00394
SMc00395: SMc00395 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, at 345,628 to 346,266
SMc00395
SMc00396: SMc00396 - hypothetical protein, at 346,263 to 346,715
SMc00396
Position (kb) 343
344
345
346 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 342.959 kb on + strand at 342.959 kb on + strand at 342.959 kb on + strand at 342.959 kb on + strand at 342.960 kb on - strand at 342.960 kb on - strand at 342.960 kb on - strand at 342.962 kb on + strand at 342.963 kb on - strand at 343.014 kb on + strand at 343.014 kb on + strand at 343.015 kb on - strand at 343.150 kb on + strand, within SMc00391 at 343.232 kb on + strand at 343.232 kb on + strand at 343.242 kb on + strand at 343.243 kb on - strand at 343.499 kb on + strand at 343.499 kb on + strand at 343.510 kb on + strand at 343.511 kb on - strand at 343.511 kb on - strand at 343.511 kb on - strand at 343.920 kb on + strand at 343.920 kb on + strand at 343.921 kb on - strand at 343.955 kb on + strand at 343.955 kb on + strand at 343.956 kb on - strand at 345.560 kb on - strand at 345.560 kb on - strand at 345.588 kb on - strand at 345.711 kb on - strand, within SMc00395 at 345.772 kb on + strand, within SMc00395 at 345.773 kb on - strand, within SMc00395 at 345.855 kb on - strand, within SMc00395 at 345.855 kb on - strand, within SMc00395 at 345.855 kb on - strand, within SMc00395 at 346.132 kb on + strand, within SMc00395 at 346.200 kb on - strand, within SMc00395 at 346.223 kb on + strand at 346.223 kb on + strand at 346.223 kb on + strand at 346.224 kb on - strand at 346.224 kb on - strand at 346.224 kb on - strand at 346.355 kb on - strand, within SMc00396 at 346.507 kb on + strand, within SMc00396 at 346.507 kb on + strand, within SMc00396 at 346.507 kb on + strand, within SMc00396 at 346.508 kb on - strand, within SMc00396
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 342,959 + +0.4 342,959 + +0.5 342,959 + +0.8 342,959 + +0.4 342,960 - +0.2 342,960 - +1.2 342,960 - +0.7 342,962 + -1.6 342,963 - -0.5 343,014 + +0.3 343,014 + +0.4 343,015 - -1.0 343,150 + SMc00391 0.65 -3.4 343,232 + +0.6 343,232 + -0.0 343,242 + -0.3 343,243 - -0.4 343,499 + +1.0 343,499 + +1.5 343,510 + +0.0 343,511 - +0.9 343,511 - -3.4 343,511 - -0.6 343,920 + +1.1 343,920 + +1.0 343,921 - -0.9 343,955 + -2.5 343,955 + -2.6 343,956 - -0.9 345,560 - -2.4 345,560 - +0.6 345,588 - -2.2 345,711 - SMc00395 0.13 +0.7 345,772 + SMc00395 0.23 -0.0 345,773 - SMc00395 0.23 +0.2 345,855 - SMc00395 0.36 -2.7 345,855 - SMc00395 0.36 +0.2 345,855 - SMc00395 0.36 -0.3 346,132 + SMc00395 0.79 +1.0 346,200 - SMc00395 0.90 -0.1 346,223 + +1.4 346,223 + +1.2 346,223 + +0.1 346,224 - +0.3 346,224 - +3.5 346,224 - +0.9 346,355 - SMc00396 0.20 +3.3 346,507 + SMc00396 0.54 -0.0 346,507 + SMc00396 0.54 -0.5 346,507 + SMc00396 0.54 -0.7 346,508 - SMc00396 0.54 -0.1
Or see this region's nucleotide sequence