Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa2400 and SMa2402 overlap by 4 nucleotides SMa2402 and SMa2404 overlap by 14 nucleotides
SMa2400: SMa2400 - diaminobutyrate--2-oxoglutarate aminotransferase, at 1,306,179 to 1,307,591
SMa2400
SMa2402: SMa2402 - RhsB L-2,4-diaminobutyrate decarboxylase, at 1,307,588 to 1,309,075
SMa2402
SMa2404: SMa2404 - RhbC rhizobactin biosynthesis protein, at 1,309,062 to 1,310,819
SMa2404
Position (kb)
1307
1308
1309
1310 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1306.686 kb on - strand, within SMa2400 at 1306.686 kb on - strand, within SMa2400 at 1307.041 kb on - strand, within SMa2400 at 1307.063 kb on + strand, within SMa2400 at 1307.108 kb on - strand, within SMa2400 at 1307.127 kb on + strand, within SMa2400 at 1307.127 kb on + strand, within SMa2400 at 1307.128 kb on - strand, within SMa2400 at 1307.313 kb on + strand, within SMa2400 at 1307.313 kb on + strand, within SMa2400 at 1307.313 kb on + strand, within SMa2400 at 1307.314 kb on - strand, within SMa2400 at 1307.314 kb on - strand, within SMa2400 at 1307.314 kb on - strand, within SMa2400 at 1307.513 kb on - strand at 1307.750 kb on + strand, within SMa2402 at 1307.776 kb on - strand, within SMa2402 at 1307.872 kb on + strand, within SMa2402 at 1307.872 kb on + strand, within SMa2402 at 1307.873 kb on - strand, within SMa2402 at 1307.873 kb on - strand, within SMa2402 at 1307.873 kb on - strand, within SMa2402 at 1308.113 kb on + strand, within SMa2402 at 1308.113 kb on + strand, within SMa2402 at 1308.114 kb on - strand, within SMa2402 at 1308.241 kb on + strand, within SMa2402 at 1308.242 kb on - strand, within SMa2402 at 1308.283 kb on + strand, within SMa2402 at 1308.438 kb on - strand, within SMa2402 at 1308.520 kb on + strand at 1308.520 kb on + strand, within SMa2402 at 1308.521 kb on - strand, within SMa2402 at 1308.605 kb on + strand, within SMa2402 at 1308.610 kb on + strand, within SMa2402 at 1308.764 kb on - strand, within SMa2402 at 1308.764 kb on - strand, within SMa2402 at 1308.764 kb on - strand, within SMa2402 at 1308.801 kb on - strand, within SMa2402 at 1309.073 kb on + strand at 1309.114 kb on + strand at 1309.173 kb on - strand at 1309.173 kb on - strand at 1309.333 kb on + strand, within SMa2404 at 1309.333 kb on + strand, within SMa2404 at 1309.334 kb on - strand, within SMa2404 at 1309.334 kb on - strand, within SMa2404 at 1309.334 kb on - strand, within SMa2404 at 1309.560 kb on + strand, within SMa2404 at 1309.561 kb on - strand, within SMa2404 at 1309.626 kb on - strand, within SMa2404 at 1309.975 kb on - strand, within SMa2404 at 1309.996 kb on + strand, within SMa2404 at 1309.997 kb on - strand, within SMa2404 at 1309.997 kb on - strand, within SMa2404 at 1309.997 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 1,306,686 - SMa2400 0.36 +0.3 1,306,686 - SMa2400 0.36 -0.3 1,307,041 - SMa2400 0.61 -0.4 1,307,063 + SMa2400 0.63 +0.5 1,307,108 - SMa2400 0.66 +3.7 1,307,127 + SMa2400 0.67 -1.4 1,307,127 + SMa2400 0.67 -0.1 1,307,128 - SMa2400 0.67 +0.4 1,307,313 + SMa2400 0.80 +0.7 1,307,313 + SMa2400 0.80 -1.5 1,307,313 + SMa2400 0.80 -0.9 1,307,314 - SMa2400 0.80 -0.5 1,307,314 - SMa2400 0.80 -1.7 1,307,314 - SMa2400 0.80 -3.0 1,307,513 - +1.5 1,307,750 + SMa2402 0.11 +0.7 1,307,776 - SMa2402 0.13 +1.7 1,307,872 + SMa2402 0.19 +2.2 1,307,872 + SMa2402 0.19 +0.9 1,307,873 - SMa2402 0.19 -1.1 1,307,873 - SMa2402 0.19 -0.5 1,307,873 - SMa2402 0.19 +0.1 1,308,113 + SMa2402 0.35 -1.9 1,308,113 + SMa2402 0.35 -0.5 1,308,114 - SMa2402 0.35 +0.3 1,308,241 + SMa2402 0.44 -0.4 1,308,242 - SMa2402 0.44 -0.0 1,308,283 + SMa2402 0.47 -0.1 1,308,438 - SMa2402 0.57 +0.2 1,308,520 + +0.9 1,308,520 + SMa2402 0.63 +0.3 1,308,521 - SMa2402 0.63 +0.9 1,308,605 + SMa2402 0.68 +2.3 1,308,610 + SMa2402 0.69 -1.5 1,308,764 - SMa2402 0.79 -2.7 1,308,764 - SMa2402 0.79 +2.7 1,308,764 - SMa2402 0.79 +0.9 1,308,801 - SMa2402 0.82 +1.1 1,309,073 + -0.7 1,309,114 + +2.2 1,309,173 - -1.7 1,309,173 - -0.4 1,309,333 + SMa2404 0.15 -0.5 1,309,333 + SMa2404 0.15 -0.0 1,309,334 - SMa2404 0.15 -1.1 1,309,334 - SMa2404 0.15 +0.1 1,309,334 - SMa2404 0.15 -1.1 1,309,560 + SMa2404 0.28 -1.2 1,309,561 - SMa2404 0.28 +2.0 1,309,626 - SMa2404 0.32 -3.3 1,309,975 - SMa2404 0.52 -2.1 1,309,996 + SMa2404 0.53 -1.9 1,309,997 - SMa2404 0.53 -0.7 1,309,997 - SMa2404 0.53 -1.0 1,309,997 - +1.9
Or see this region's nucleotide sequence