Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa2033 and SMa2034 are separated by 930 nucleotides SMa2034 and SMa2037 are separated by 9 nucleotides
SMa2033: SMa2033 - Transglycosylase, at 1,149,915 to 1,150,712
SMa2033
SMa2034: SMa2034 - hypothetical protein, at 1,151,643 to 1,151,888
SMa2034
SMa2037: SMa2037 - Oxidoreductase, at 1,151,898 to 1,154,150
SMa2037
Position (kb)
1151
1152 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1150.718 kb on + strand at 1150.719 kb on - strand at 1150.719 kb on - strand at 1150.719 kb on - strand at 1150.735 kb on - strand at 1151.077 kb on + strand at 1151.106 kb on - strand at 1151.279 kb on + strand at 1151.371 kb on - strand at 1151.376 kb on + strand at 1151.376 kb on + strand at 1151.454 kb on + strand at 1151.508 kb on - strand at 1151.509 kb on + strand at 1151.619 kb on - strand at 1151.717 kb on - strand, within SMa2034 at 1151.811 kb on - strand, within SMa2034 at 1151.884 kb on - strand at 1151.900 kb on - strand at 1151.942 kb on + strand at 1152.079 kb on - strand at 1152.079 kb on - strand at 1152.083 kb on + strand at 1152.083 kb on + strand at 1152.084 kb on - strand at 1152.154 kb on + strand, within SMa2037 at 1152.158 kb on + strand, within SMa2037 at 1152.158 kb on + strand, within SMa2037 at 1152.158 kb on + strand, within SMa2037 at 1152.159 kb on - strand, within SMa2037 at 1152.159 kb on - strand, within SMa2037 at 1152.159 kb on - strand, within SMa2037 at 1152.160 kb on + strand, within SMa2037 at 1152.160 kb on + strand, within SMa2037 at 1152.161 kb on - strand, within SMa2037 at 1152.161 kb on - strand, within SMa2037 at 1152.161 kb on - strand, within SMa2037 at 1152.208 kb on + strand, within SMa2037 at 1152.209 kb on - strand, within SMa2037 at 1152.266 kb on - strand, within SMa2037 at 1152.317 kb on + strand, within SMa2037 at 1152.318 kb on - strand, within SMa2037 at 1152.536 kb on + strand, within SMa2037 at 1152.537 kb on - strand, within SMa2037
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 1,150,718 + -0.8 1,150,719 - -0.6 1,150,719 - +2.8 1,150,719 - +0.1 1,150,735 - -1.9 1,151,077 + -1.7 1,151,106 - -3.2 1,151,279 + +0.6 1,151,371 - +1.2 1,151,376 + -0.6 1,151,376 + -2.8 1,151,454 + +0.8 1,151,508 - -0.4 1,151,509 + -0.2 1,151,619 - -2.4 1,151,717 - SMa2034 0.30 +2.1 1,151,811 - SMa2034 0.68 +2.9 1,151,884 - -1.3 1,151,900 - -0.2 1,151,942 + +1.3 1,152,079 - -0.6 1,152,079 - +2.9 1,152,083 + -0.4 1,152,083 + +1.7 1,152,084 - -1.3 1,152,154 + SMa2037 0.11 -0.7 1,152,158 + SMa2037 0.12 +0.9 1,152,158 + SMa2037 0.12 +1.1 1,152,158 + SMa2037 0.12 -1.4 1,152,159 - SMa2037 0.12 +0.9 1,152,159 - SMa2037 0.12 +0.3 1,152,159 - SMa2037 0.12 +0.6 1,152,160 + SMa2037 0.12 -0.0 1,152,160 + SMa2037 0.12 -2.3 1,152,161 - SMa2037 0.12 -0.7 1,152,161 - SMa2037 0.12 +1.9 1,152,161 - SMa2037 0.12 -0.7 1,152,208 + SMa2037 0.14 -0.6 1,152,209 - SMa2037 0.14 -1.2 1,152,266 - SMa2037 0.16 -1.4 1,152,317 + SMa2037 0.19 +0.7 1,152,318 - SMa2037 0.19 +1.6 1,152,536 + SMa2037 0.28 -0.7 1,152,537 - SMa2037 0.28 -1.4
Or see this region's nucleotide sequence