Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1819 and SMa1820 overlap by 1 nucleotides SMa1820 and SMa1821 are separated by 67 nucleotides SMa1821 and SMa1822 are separated by 225 nucleotides
SMa1819: SMa1819 - hypothetical protein, at 1,030,041 to 1,032,026
SMa1819
SMa1820: SMa1820 - hypothetical protein, at 1,032,026 to 1,032,334
SMa1820
SMa1821: SMa1821 - hydrolase, at 1,032,402 to 1,033,052
SMa1821
SMa1822: SMa1822 - hypothetical protein, at 1,033,278 to 1,034,189
SMa1822
Position (kb)
1032
1033 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1031.071 kb on + strand, within SMa1819 at 1031.141 kb on - strand, within SMa1819 at 1031.207 kb on - strand, within SMa1819 at 1031.375 kb on + strand, within SMa1819 at 1031.435 kb on + strand, within SMa1819 at 1031.437 kb on + strand at 1031.685 kb on - strand, within SMa1819 at 1031.689 kb on + strand, within SMa1819 at 1031.689 kb on + strand, within SMa1819 at 1031.690 kb on - strand, within SMa1819 at 1032.073 kb on + strand, within SMa1820 at 1032.074 kb on - strand, within SMa1820 at 1032.074 kb on - strand, within SMa1820 at 1032.074 kb on - strand, within SMa1820 at 1032.125 kb on - strand, within SMa1820 at 1032.207 kb on - strand, within SMa1820 at 1032.264 kb on + strand, within SMa1820 at 1032.264 kb on + strand, within SMa1820 at 1032.265 kb on - strand, within SMa1820 at 1032.306 kb on + strand at 1032.306 kb on + strand at 1032.307 kb on - strand at 1032.307 kb on - strand at 1032.307 kb on - strand at 1032.457 kb on + strand at 1032.499 kb on + strand, within SMa1821 at 1032.500 kb on - strand, within SMa1821 at 1032.500 kb on - strand, within SMa1821 at 1032.542 kb on - strand, within SMa1821 at 1032.542 kb on - strand, within SMa1821 at 1032.542 kb on - strand, within SMa1821 at 1033.208 kb on + strand at 1033.209 kb on - strand at 1033.209 kb on - strand at 1033.237 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 1,031,071 + SMa1819 0.52 -1.5 1,031,141 - SMa1819 0.55 -3.2 1,031,207 - SMa1819 0.59 -1.5 1,031,375 + SMa1819 0.67 -0.1 1,031,435 + SMa1819 0.70 -0.5 1,031,437 + +2.1 1,031,685 - SMa1819 0.83 +1.0 1,031,689 + SMa1819 0.83 +2.0 1,031,689 + SMa1819 0.83 +0.2 1,031,690 - SMa1819 0.83 -1.8 1,032,073 + SMa1820 0.15 +0.6 1,032,074 - SMa1820 0.16 -0.3 1,032,074 - SMa1820 0.16 -2.4 1,032,074 - SMa1820 0.16 +0.5 1,032,125 - SMa1820 0.32 -0.9 1,032,207 - SMa1820 0.59 -1.3 1,032,264 + SMa1820 0.77 +0.2 1,032,264 + SMa1820 0.77 -1.4 1,032,265 - SMa1820 0.77 -1.4 1,032,306 + +2.1 1,032,306 + +0.9 1,032,307 - +0.8 1,032,307 - +0.8 1,032,307 - +0.3 1,032,457 + +0.7 1,032,499 + SMa1821 0.15 -1.4 1,032,500 - SMa1821 0.15 +1.9 1,032,500 - SMa1821 0.15 -0.8 1,032,542 - SMa1821 0.22 -0.6 1,032,542 - SMa1821 0.22 -0.0 1,032,542 - SMa1821 0.22 -0.3 1,033,208 + +0.2 1,033,209 - -1.2 1,033,209 - -1.7 1,033,237 - +1.3
Or see this region's nucleotide sequence