Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1751 and SMa1753 are separated by 3 nucleotides SMa1753 and SMa1754 overlap by 4 nucleotides
SMa1751: SMa1751 - ABC transporter permease, at 994,674 to 995,456
SMa1751
SMa1753: SMa1753 - ABC transporter permease, at 995,460 to 996,638
SMa1753
SMa1754: SMa1754 - ABC transporter ATP-binding protein, at 996,635 to 997,714
SMa1754
Position (kb) 995
996
997 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 994.503 kb on + strand at 994.504 kb on - strand at 994.641 kb on - strand at 994.676 kb on - strand at 994.790 kb on + strand, within SMa1751 at 994.790 kb on + strand, within SMa1751 at 994.794 kb on - strand, within SMa1751 at 994.794 kb on - strand, within SMa1751 at 994.899 kb on + strand, within SMa1751 at 994.899 kb on + strand, within SMa1751 at 994.899 kb on + strand, within SMa1751 at 994.899 kb on + strand, within SMa1751 at 995.071 kb on + strand, within SMa1751 at 995.072 kb on - strand, within SMa1751 at 995.072 kb on - strand, within SMa1751 at 995.152 kb on - strand, within SMa1751 at 995.152 kb on - strand, within SMa1751 at 995.206 kb on - strand, within SMa1751 at 995.206 kb on - strand, within SMa1751 at 995.345 kb on - strand, within SMa1751 at 995.497 kb on + strand at 995.498 kb on - strand at 995.498 kb on - strand at 995.498 kb on - strand at 995.498 kb on - strand at 995.582 kb on - strand, within SMa1753 at 995.582 kb on - strand, within SMa1753 at 995.644 kb on + strand, within SMa1753 at 995.644 kb on + strand, within SMa1753 at 995.644 kb on + strand, within SMa1753 at 995.645 kb on - strand, within SMa1753 at 995.647 kb on + strand, within SMa1753 at 995.647 kb on + strand, within SMa1753 at 995.647 kb on + strand, within SMa1753 at 995.647 kb on + strand, within SMa1753 at 995.647 kb on + strand, within SMa1753 at 995.648 kb on - strand, within SMa1753 at 995.653 kb on - strand, within SMa1753 at 995.790 kb on - strand, within SMa1753 at 995.800 kb on + strand, within SMa1753 at 995.840 kb on + strand, within SMa1753 at 995.841 kb on - strand, within SMa1753 at 996.053 kb on - strand, within SMa1753 at 996.542 kb on + strand at 996.542 kb on + strand at 996.543 kb on - strand at 996.543 kb on - strand at 996.543 kb on - strand at 996.543 kb on - strand at 996.571 kb on - strand at 996.572 kb on + strand at 996.678 kb on + strand at 996.679 kb on - strand at 997.035 kb on + strand at 997.035 kb on + strand, within SMa1754 at 997.035 kb on + strand, within SMa1754 at 997.036 kb on - strand, within SMa1754 at 997.432 kb on + strand, within SMa1754 at 997.433 kb on - strand, within SMa1754 at 997.433 kb on - strand, within SMa1754 at 997.449 kb on + strand, within SMa1754 at 997.450 kb on - strand, within SMa1754 at 997.450 kb on - strand, within SMa1754 at 997.522 kb on + strand, within SMa1754
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 994,503 + +0.4 994,504 - -0.3 994,641 - -1.4 994,676 - +1.1 994,790 + SMa1751 0.15 -1.7 994,790 + SMa1751 0.15 -0.4 994,794 - SMa1751 0.15 -0.9 994,794 - SMa1751 0.15 -1.1 994,899 + SMa1751 0.29 +1.4 994,899 + SMa1751 0.29 +4.6 994,899 + SMa1751 0.29 +0.9 994,899 + SMa1751 0.29 -0.1 995,071 + SMa1751 0.51 +0.5 995,072 - SMa1751 0.51 +1.4 995,072 - SMa1751 0.51 -0.1 995,152 - SMa1751 0.61 -0.3 995,152 - SMa1751 0.61 -1.3 995,206 - SMa1751 0.68 +1.2 995,206 - SMa1751 0.68 -1.0 995,345 - SMa1751 0.86 -0.7 995,497 + +0.3 995,498 - +0.9 995,498 - +0.9 995,498 - -0.3 995,498 - +0.0 995,582 - SMa1753 0.10 -0.5 995,582 - SMa1753 0.10 -0.7 995,644 + SMa1753 0.16 +2.7 995,644 + SMa1753 0.16 +0.2 995,644 + SMa1753 0.16 +0.3 995,645 - SMa1753 0.16 +0.5 995,647 + SMa1753 0.16 +0.5 995,647 + SMa1753 0.16 +0.3 995,647 + SMa1753 0.16 -1.1 995,647 + SMa1753 0.16 -0.3 995,647 + SMa1753 0.16 +4.2 995,648 - SMa1753 0.16 +0.4 995,653 - SMa1753 0.16 -0.2 995,790 - SMa1753 0.28 +1.4 995,800 + SMa1753 0.29 -2.7 995,840 + SMa1753 0.32 +2.5 995,841 - SMa1753 0.32 -3.3 996,053 - SMa1753 0.50 +0.2 996,542 + -2.6 996,542 + -1.6 996,543 - +0.3 996,543 - -2.0 996,543 - -0.1 996,543 - -0.2 996,571 - +2.9 996,572 + +2.1 996,678 + -0.7 996,679 - -0.7 997,035 + +0.9 997,035 + SMa1754 0.37 +0.7 997,035 + SMa1754 0.37 +3.9 997,036 - SMa1754 0.37 +1.8 997,432 + SMa1754 0.74 +0.4 997,433 - SMa1754 0.74 +0.4 997,433 - SMa1754 0.74 +3.2 997,449 + SMa1754 0.75 -0.7 997,450 - SMa1754 0.75 -1.4 997,450 - SMa1754 0.75 +0.6 997,522 + SMa1754 0.82 +2.3
Or see this region's nucleotide sequence