Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1737 and SMa1740 are separated by 467 nucleotides SMa1740 and SMa1741 overlap by 4 nucleotides SMa1741 and SMa1742 overlap by 1 nucleotides
SMa1737: SMa1737 - hypothetical protein, at 982,470 to 983,528
SMa1737
SMa1740: SMa1740 - Siderophore-interacting protein, at 983,996 to 985,066
SMa1740
SMa1741: SMa1741 - ABC transporter ATP-binding protein, at 985,063 to 985,905
SMa1741
SMa1742: SMa1742 - Fe3+-siderophore ABC transporter permease, at 985,905 to 986,942
SMa1742
Position (kb) 983
984
985
986 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 982.996 kb on + strand, within SMa1737 at 983.028 kb on + strand, within SMa1737 at 983.203 kb on + strand, within SMa1737 at 983.204 kb on - strand, within SMa1737 at 983.381 kb on - strand, within SMa1737 at 983.381 kb on - strand, within SMa1737 at 983.386 kb on + strand, within SMa1737 at 983.386 kb on + strand, within SMa1737 at 983.435 kb on + strand at 983.714 kb on + strand at 983.714 kb on + strand at 983.739 kb on + strand at 983.739 kb on + strand at 983.740 kb on - strand at 983.740 kb on - strand at 983.761 kb on + strand at 983.812 kb on + strand at 983.878 kb on - strand at 983.909 kb on + strand at 983.992 kb on + strand at 983.992 kb on + strand at 983.993 kb on - strand at 984.036 kb on + strand at 984.036 kb on + strand at 984.037 kb on - strand at 984.037 kb on - strand at 984.037 kb on - strand at 984.082 kb on + strand at 984.083 kb on - strand at 984.090 kb on - strand at 984.090 kb on - strand at 984.090 kb on - strand at 984.090 kb on - strand at 984.090 kb on - strand at 984.192 kb on + strand, within SMa1740 at 984.284 kb on + strand, within SMa1740 at 984.284 kb on + strand, within SMa1740 at 984.284 kb on + strand, within SMa1740 at 984.284 kb on + strand, within SMa1740 at 984.285 kb on - strand, within SMa1740 at 984.287 kb on - strand, within SMa1740 at 984.324 kb on - strand, within SMa1740 at 984.324 kb on - strand, within SMa1740 at 984.529 kb on + strand, within SMa1740 at 984.530 kb on - strand, within SMa1740 at 984.530 kb on - strand, within SMa1740 at 984.531 kb on + strand, within SMa1740 at 984.531 kb on + strand, within SMa1740 at 984.531 kb on + strand, within SMa1740 at 984.532 kb on - strand, within SMa1740 at 984.532 kb on - strand, within SMa1740 at 984.668 kb on + strand, within SMa1740 at 984.923 kb on + strand, within SMa1740 at 984.924 kb on - strand, within SMa1740 at 985.019 kb on - strand at 985.136 kb on - strand at 985.327 kb on - strand, within SMa1741 at 985.942 kb on + strand at 985.943 kb on - strand at 985.943 kb on - strand at 985.944 kb on + strand at 985.951 kb on + strand at 985.951 kb on + strand at 985.983 kb on + strand at 985.984 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 982,996 + SMa1737 0.50 +0.8 983,028 + SMa1737 0.53 -0.7 983,203 + SMa1737 0.69 +2.5 983,204 - SMa1737 0.69 -1.2 983,381 - SMa1737 0.86 +2.2 983,381 - SMa1737 0.86 +0.3 983,386 + SMa1737 0.86 -0.9 983,386 + SMa1737 0.86 -1.2 983,435 + +1.4 983,714 + +0.2 983,714 + +1.2 983,739 + -2.3 983,739 + +0.3 983,740 - +0.3 983,740 - +1.3 983,761 + -0.3 983,812 + -2.3 983,878 - +0.4 983,909 + +0.1 983,992 + +0.4 983,992 + -0.9 983,993 - +0.7 984,036 + +0.6 984,036 + -0.3 984,037 - -1.2 984,037 - -2.4 984,037 - -1.6 984,082 + +0.0 984,083 - -0.7 984,090 - +0.0 984,090 - -0.5 984,090 - -2.3 984,090 - -0.0 984,090 - -0.4 984,192 + SMa1740 0.18 +0.2 984,284 + SMa1740 0.27 +0.4 984,284 + SMa1740 0.27 +0.3 984,284 + SMa1740 0.27 +1.8 984,284 + SMa1740 0.27 +1.1 984,285 - SMa1740 0.27 +0.9 984,287 - SMa1740 0.27 +0.6 984,324 - SMa1740 0.31 +0.1 984,324 - SMa1740 0.31 +0.2 984,529 + SMa1740 0.50 +0.4 984,530 - SMa1740 0.50 +0.1 984,530 - SMa1740 0.50 +5.2 984,531 + SMa1740 0.50 -1.0 984,531 + SMa1740 0.50 -1.3 984,531 + SMa1740 0.50 -1.4 984,532 - SMa1740 0.50 -1.1 984,532 - SMa1740 0.50 +2.2 984,668 + SMa1740 0.63 -2.8 984,923 + SMa1740 0.87 -1.8 984,924 - SMa1740 0.87 +0.6 985,019 - -0.1 985,136 - -0.0 985,327 - SMa1741 0.31 -1.2 985,942 + +3.5 985,943 - +1.0 985,943 - +0.9 985,944 + -0.1 985,951 + -1.9 985,951 + +0.3 985,983 + -1.7 985,984 - -0.4
Or see this region's nucleotide sequence