Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1684 and SMa1686 overlap by 8 nucleotides SMa1686 and SMa1688 are separated by 81 nucleotides
SMa1684: SMa1684 - Sensory histidine kinase, at 948,970 to 950,853
SMa1684
SMa1686: SMa1686 - Two-component response regulator, at 950,846 to 951,487
SMa1686
SMa1688: SMa1688 - Two-component response regulator, at 951,569 to 951,985
SMa1688
Position (kb) 950
951
952 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 949.918 kb on + strand, within SMa1684 at 949.919 kb on - strand, within SMa1684 at 949.919 kb on - strand, within SMa1684 at 950.020 kb on + strand, within SMa1684 at 950.020 kb on + strand, within SMa1684 at 950.021 kb on - strand, within SMa1684 at 950.311 kb on - strand, within SMa1684 at 950.466 kb on - strand, within SMa1684 at 950.466 kb on - strand, within SMa1684 at 950.466 kb on - strand, within SMa1684 at 950.466 kb on - strand, within SMa1684 at 950.707 kb on + strand at 950.708 kb on - strand at 950.708 kb on - strand at 950.770 kb on + strand at 950.771 kb on - strand at 950.877 kb on + strand at 950.878 kb on - strand at 950.878 kb on - strand at 950.948 kb on + strand, within SMa1686 at 950.949 kb on - strand, within SMa1686 at 950.949 kb on - strand, within SMa1686 at 951.245 kb on - strand, within SMa1686 at 951.297 kb on + strand, within SMa1686 at 951.297 kb on + strand, within SMa1686 at 951.328 kb on + strand, within SMa1686 at 951.489 kb on + strand at 951.489 kb on + strand at 951.490 kb on - strand at 951.490 kb on - strand at 951.490 kb on - strand at 951.543 kb on + strand at 951.621 kb on + strand, within SMa1688 at 951.622 kb on - strand, within SMa1688 at 951.742 kb on - strand, within SMa1688 at 951.777 kb on + strand, within SMa1688 at 951.777 kb on + strand, within SMa1688 at 952.094 kb on + strand at 952.095 kb on - strand at 952.136 kb on - strand at 952.406 kb on - strand at 952.415 kb on - strand at 952.415 kb on - strand at 952.415 kb on - strand at 952.415 kb on - strand at 952.425 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 949,918 + SMa1684 0.50 -2.4 949,919 - SMa1684 0.50 -0.8 949,919 - SMa1684 0.50 -3.8 950,020 + SMa1684 0.56 -1.1 950,020 + SMa1684 0.56 -2.8 950,021 - SMa1684 0.56 -0.8 950,311 - SMa1684 0.71 -1.4 950,466 - SMa1684 0.79 -0.3 950,466 - SMa1684 0.79 +0.9 950,466 - SMa1684 0.79 +1.9 950,466 - SMa1684 0.79 +0.9 950,707 + -1.8 950,708 - +2.8 950,708 - -1.4 950,770 + -1.9 950,771 - -2.1 950,877 + -2.6 950,878 - -2.9 950,878 - +1.2 950,948 + SMa1686 0.16 +3.5 950,949 - SMa1686 0.16 -2.7 950,949 - SMa1686 0.16 -0.1 951,245 - SMa1686 0.62 -1.7 951,297 + SMa1686 0.70 +0.9 951,297 + SMa1686 0.70 -2.1 951,328 + SMa1686 0.75 -1.1 951,489 + +0.7 951,489 + +0.0 951,490 - +1.0 951,490 - -0.8 951,490 - +1.0 951,543 + +0.4 951,621 + SMa1688 0.12 -1.3 951,622 - SMa1688 0.13 +0.5 951,742 - SMa1688 0.41 +0.4 951,777 + SMa1688 0.50 -0.8 951,777 + SMa1688 0.50 -1.1 952,094 + +1.9 952,095 - +0.8 952,136 - -3.0 952,406 - -3.7 952,415 - +1.8 952,415 - -1.2 952,415 - -1.7 952,415 - -1.7 952,425 + -3.1
Or see this region's nucleotide sequence