Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1674 and SMa1675 overlap by 2 nucleotides SMa1675 and SMa1676 are separated by 60 nucleotides SMa1676 and SMa1677 are separated by 84 nucleotides
SMa1674: SMa1674 - hypothetical protein, at 938,993 to 939,304
SMa1674
SMa1675: SMa1675 - hypothetical protein, at 939,303 to 939,953
SMa1675
SMa1676: SMa1676 - hypothetical protein, at 940,014 to 941,072
SMa1676
SMa1677: SMa1677 - Metallo-dependent hydrolase, at 941,157 to 942,590
SMa1677
Position (kb) 940
941
942 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 939.016 kb on + strand at 939.017 kb on - strand at 939.081 kb on + strand, within SMa1674 at 939.082 kb on - strand, within SMa1674 at 939.103 kb on - strand, within SMa1674 at 939.267 kb on - strand, within SMa1674 at 939.267 kb on - strand, within SMa1674 at 939.267 kb on - strand, within SMa1674 at 939.267 kb on - strand, within SMa1674 at 939.269 kb on + strand, within SMa1674 at 939.497 kb on - strand, within SMa1675 at 939.498 kb on + strand, within SMa1675 at 939.498 kb on + strand, within SMa1675 at 939.499 kb on - strand, within SMa1675 at 939.499 kb on - strand, within SMa1675 at 939.556 kb on + strand, within SMa1675 at 939.557 kb on - strand, within SMa1675 at 939.557 kb on - strand, within SMa1675 at 939.557 kb on - strand, within SMa1675 at 939.558 kb on + strand, within SMa1675 at 939.558 kb on + strand, within SMa1675 at 939.559 kb on - strand, within SMa1675 at 939.559 kb on - strand, within SMa1675 at 939.560 kb on + strand, within SMa1675 at 939.561 kb on - strand, within SMa1675 at 939.644 kb on + strand, within SMa1675 at 939.984 kb on + strand at 939.985 kb on - strand at 939.985 kb on - strand at 940.166 kb on - strand, within SMa1676 at 940.244 kb on - strand, within SMa1676 at 940.375 kb on + strand, within SMa1676 at 940.375 kb on + strand, within SMa1676 at 940.375 kb on + strand, within SMa1676 at 940.375 kb on + strand at 940.375 kb on + strand, within SMa1676 at 940.376 kb on - strand, within SMa1676 at 940.376 kb on - strand, within SMa1676 at 940.493 kb on - strand, within SMa1676 at 940.615 kb on + strand, within SMa1676 at 940.615 kb on + strand, within SMa1676 at 940.615 kb on + strand, within SMa1676 at 940.616 kb on - strand, within SMa1676 at 940.652 kb on + strand, within SMa1676 at 940.653 kb on - strand, within SMa1676 at 940.680 kb on - strand, within SMa1676 at 940.769 kb on - strand, within SMa1676 at 940.769 kb on - strand, within SMa1676 at 940.833 kb on + strand, within SMa1676 at 940.833 kb on + strand, within SMa1676 at 940.834 kb on - strand, within SMa1676 at 940.898 kb on - strand, within SMa1676 at 940.910 kb on + strand, within SMa1676 at 940.952 kb on + strand, within SMa1676 at 940.953 kb on - strand, within SMa1676 at 941.044 kb on + strand at 941.045 kb on - strand at 941.078 kb on + strand at 941.079 kb on - strand at 941.079 kb on - strand at 941.109 kb on + strand at 941.395 kb on + strand, within SMa1677 at 941.418 kb on + strand, within SMa1677 at 941.419 kb on - strand, within SMa1677 at 941.489 kb on - strand, within SMa1677 at 941.499 kb on + strand, within SMa1677 at 941.500 kb on - strand, within SMa1677 at 941.506 kb on + strand, within SMa1677 at 941.507 kb on - strand, within SMa1677 at 941.530 kb on - strand, within SMa1677 at 941.737 kb on + strand, within SMa1677 at 941.737 kb on + strand, within SMa1677 at 941.737 kb on + strand, within SMa1677 at 941.737 kb on + strand, within SMa1677 at 941.737 kb on + strand, within SMa1677 at 941.738 kb on - strand, within SMa1677 at 941.738 kb on - strand, within SMa1677 at 941.738 kb on - strand, within SMa1677 at 941.845 kb on - strand, within SMa1677 at 942.037 kb on + strand, within SMa1677 at 942.037 kb on + strand, within SMa1677 at 942.037 kb on + strand, within SMa1677 at 942.037 kb on + strand, within SMa1677 at 942.037 kb on + strand, within SMa1677 at 942.038 kb on - strand, within SMa1677
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 939,016 + -3.5 939,017 - -0.5 939,081 + SMa1674 0.28 +0.0 939,082 - SMa1674 0.29 +0.2 939,103 - SMa1674 0.35 -2.1 939,267 - SMa1674 0.88 -2.5 939,267 - SMa1674 0.88 -0.4 939,267 - SMa1674 0.88 -2.3 939,267 - SMa1674 0.88 -3.3 939,269 + SMa1674 0.88 -2.7 939,497 - SMa1675 0.30 -2.6 939,498 + SMa1675 0.30 -1.8 939,498 + SMa1675 0.30 +0.6 939,499 - SMa1675 0.30 -2.7 939,499 - SMa1675 0.30 +0.6 939,556 + SMa1675 0.39 -1.3 939,557 - SMa1675 0.39 +1.3 939,557 - SMa1675 0.39 +1.0 939,557 - SMa1675 0.39 +0.9 939,558 + SMa1675 0.39 -0.4 939,558 + SMa1675 0.39 +0.1 939,559 - SMa1675 0.39 +1.9 939,559 - SMa1675 0.39 -0.1 939,560 + SMa1675 0.39 -0.5 939,561 - SMa1675 0.40 -0.5 939,644 + SMa1675 0.52 +0.3 939,984 + -1.2 939,985 - +0.3 939,985 - +2.5 940,166 - SMa1676 0.14 +1.1 940,244 - SMa1676 0.22 -1.9 940,375 + SMa1676 0.34 +1.6 940,375 + SMa1676 0.34 -1.9 940,375 + SMa1676 0.34 -1.0 940,375 + -1.4 940,375 + SMa1676 0.34 +0.3 940,376 - SMa1676 0.34 +0.1 940,376 - SMa1676 0.34 -0.1 940,493 - SMa1676 0.45 +1.6 940,615 + SMa1676 0.57 -0.8 940,615 + SMa1676 0.57 +1.0 940,615 + SMa1676 0.57 -0.2 940,616 - SMa1676 0.57 -1.7 940,652 + SMa1676 0.60 +2.1 940,653 - SMa1676 0.60 +0.9 940,680 - SMa1676 0.63 +2.1 940,769 - SMa1676 0.71 +1.3 940,769 - SMa1676 0.71 -0.6 940,833 + SMa1676 0.77 -0.7 940,833 + SMa1676 0.77 -0.1 940,834 - SMa1676 0.77 +0.9 940,898 - SMa1676 0.83 +0.2 940,910 + SMa1676 0.85 -1.3 940,952 + SMa1676 0.89 -0.5 940,953 - SMa1676 0.89 +1.1 941,044 + -1.4 941,045 - -0.0 941,078 + +1.5 941,079 - -0.7 941,079 - -0.7 941,109 + +0.9 941,395 + SMa1677 0.17 +1.1 941,418 + SMa1677 0.18 -3.4 941,419 - SMa1677 0.18 -1.7 941,489 - SMa1677 0.23 -0.9 941,499 + SMa1677 0.24 -3.7 941,500 - SMa1677 0.24 -0.6 941,506 + SMa1677 0.24 -0.8 941,507 - SMa1677 0.24 -0.7 941,530 - SMa1677 0.26 +1.5 941,737 + SMa1677 0.40 +1.2 941,737 + SMa1677 0.40 +0.6 941,737 + SMa1677 0.40 +0.8 941,737 + SMa1677 0.40 +0.5 941,737 + SMa1677 0.40 -3.6 941,738 - SMa1677 0.41 +1.9 941,738 - SMa1677 0.41 -1.4 941,738 - SMa1677 0.41 +0.2 941,845 - SMa1677 0.48 -0.2 942,037 + SMa1677 0.61 -0.2 942,037 + SMa1677 0.61 +3.4 942,037 + SMa1677 0.61 -4.0 942,037 + SMa1677 0.61 +0.5 942,037 + SMa1677 0.61 +1.9 942,038 - SMa1677 0.61 -2.9
Or see this region's nucleotide sequence