Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1649 and SMa1650 overlap by 10 nucleotides SMa1650 and SMa1651 are separated by 13 nucleotides SMa1651 and SMa1652 are separated by 265 nucleotides
SMa1649: SMa1649 - ABC transporter permease, at 919,371 to 920,282
SMa1649
SMa1650: SMa1650 - ABC transporter permease, at 920,273 to 921,208
SMa1650
SMa1651: SMa1651 - ABC transporter substrate-binding protein, at 921,222 to 922,799
SMa1651
SMa1652: SMa1652 - hydantoin racemase, at 923,065 to 923,850
SMa1652
Position (kb) 921
922
923 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 920.262 kb on + strand at 920.263 kb on - strand at 920.419 kb on - strand, within SMa1650 at 920.636 kb on + strand, within SMa1650 at 920.636 kb on + strand, within SMa1650 at 920.661 kb on - strand, within SMa1650 at 920.743 kb on - strand, within SMa1650 at 920.743 kb on - strand, within SMa1650 at 920.743 kb on - strand, within SMa1650 at 920.827 kb on - strand, within SMa1650 at 921.007 kb on - strand, within SMa1650 at 921.260 kb on - strand at 921.322 kb on + strand at 921.521 kb on - strand, within SMa1651 at 921.550 kb on - strand, within SMa1651 at 921.872 kb on - strand, within SMa1651 at 921.872 kb on - strand, within SMa1651 at 922.150 kb on + strand, within SMa1651 at 922.150 kb on + strand, within SMa1651 at 922.151 kb on - strand, within SMa1651 at 922.151 kb on - strand, within SMa1651 at 922.181 kb on - strand, within SMa1651 at 922.181 kb on - strand, within SMa1651 at 922.306 kb on + strand, within SMa1651 at 922.323 kb on + strand, within SMa1651 at 922.358 kb on + strand, within SMa1651 at 922.359 kb on - strand, within SMa1651 at 922.364 kb on - strand, within SMa1651 at 922.364 kb on - strand, within SMa1651 at 922.588 kb on + strand, within SMa1651 at 922.588 kb on + strand, within SMa1651 at 922.636 kb on + strand, within SMa1651 at 922.636 kb on + strand, within SMa1651 at 922.637 kb on - strand, within SMa1651 at 922.781 kb on + strand at 922.840 kb on - strand at 923.037 kb on - strand at 923.041 kb on + strand at 923.046 kb on - strand at 923.081 kb on + strand at 923.095 kb on - strand at 923.095 kb on - strand at 923.095 kb on - strand at 923.095 kb on - strand at 923.206 kb on + strand, within SMa1652 at 923.220 kb on - strand, within SMa1652 at 923.220 kb on - strand, within SMa1652 at 923.449 kb on + strand, within SMa1652 at 923.498 kb on + strand, within SMa1652 at 923.517 kb on + strand, within SMa1652 at 923.517 kb on + strand, within SMa1652 at 923.517 kb on + strand, within SMa1652 at 923.518 kb on - strand, within SMa1652 at 923.591 kb on + strand, within SMa1652 at 923.592 kb on - strand, within SMa1652 at 923.630 kb on + strand, within SMa1652 at 923.740 kb on + strand, within SMa1652 at 923.759 kb on - strand, within SMa1652
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 920,262 + -0.1 920,263 - -0.3 920,419 - SMa1650 0.16 +1.3 920,636 + SMa1650 0.39 +0.5 920,636 + SMa1650 0.39 -0.9 920,661 - SMa1650 0.41 -0.0 920,743 - SMa1650 0.50 +1.9 920,743 - SMa1650 0.50 +1.2 920,743 - SMa1650 0.50 -2.3 920,827 - SMa1650 0.59 +0.5 921,007 - SMa1650 0.78 +1.6 921,260 - -0.0 921,322 + +0.9 921,521 - SMa1651 0.19 -2.7 921,550 - SMa1651 0.21 -1.1 921,872 - SMa1651 0.41 +2.8 921,872 - SMa1651 0.41 -0.9 922,150 + SMa1651 0.59 -3.7 922,150 + SMa1651 0.59 -0.3 922,151 - SMa1651 0.59 +0.6 922,151 - SMa1651 0.59 -0.7 922,181 - SMa1651 0.61 -0.4 922,181 - SMa1651 0.61 +0.1 922,306 + SMa1651 0.69 -0.7 922,323 + SMa1651 0.70 +1.2 922,358 + SMa1651 0.72 -3.5 922,359 - SMa1651 0.72 +0.9 922,364 - SMa1651 0.72 +2.5 922,364 - SMa1651 0.72 -2.3 922,588 + SMa1651 0.87 -0.1 922,588 + SMa1651 0.87 +0.6 922,636 + SMa1651 0.90 +0.9 922,636 + SMa1651 0.90 -0.8 922,637 - SMa1651 0.90 -0.7 922,781 + -0.1 922,840 - +0.2 923,037 - +0.6 923,041 + +2.0 923,046 - -1.1 923,081 + -0.2 923,095 - -3.7 923,095 - -0.2 923,095 - -1.1 923,095 - +3.7 923,206 + SMa1652 0.18 +1.5 923,220 - SMa1652 0.20 -2.3 923,220 - SMa1652 0.20 -2.7 923,449 + SMa1652 0.49 -0.5 923,498 + SMa1652 0.55 -1.9 923,517 + SMa1652 0.58 -1.0 923,517 + SMa1652 0.58 +0.6 923,517 + SMa1652 0.58 -0.7 923,518 - SMa1652 0.58 +0.3 923,591 + SMa1652 0.67 -1.3 923,592 - SMa1652 0.67 -1.1 923,630 + SMa1652 0.72 -0.1 923,740 + SMa1652 0.86 +0.9 923,759 - SMa1652 0.88 +0.1
Or see this region's nucleotide sequence