Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1586 and SMa1587 are separated by 305 nucleotides
SMa1586: SMa1586 - SyrB2 regulator, at 879,859 to 880,314
SMa1586
SMa1587: SMa1587 - EglC endo-1,3-1,4-BETA-glycanase, at 880,620 to 882,017
SMa1587
Position (kb) 880
881
882
883 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 879.650 kb on + strand at 879.651 kb on - strand at 879.651 kb on - strand at 879.689 kb on + strand at 879.689 kb on + strand at 879.696 kb on + strand at 879.697 kb on - strand at 879.714 kb on + strand at 879.715 kb on - strand at 880.018 kb on + strand, within SMa1586 at 880.019 kb on - strand, within SMa1586 at 880.038 kb on - strand, within SMa1586 at 880.038 kb on - strand, within SMa1586 at 880.041 kb on - strand, within SMa1586 at 880.150 kb on - strand, within SMa1586 at 880.150 kb on - strand, within SMa1586 at 880.151 kb on + strand, within SMa1586 at 880.239 kb on + strand, within SMa1586 at 880.330 kb on + strand at 880.330 kb on + strand at 880.331 kb on - strand at 880.335 kb on - strand at 880.335 kb on - strand at 880.453 kb on + strand at 880.454 kb on - strand at 880.454 kb on - strand at 880.465 kb on - strand at 880.498 kb on + strand at 880.499 kb on - strand at 880.499 kb on - strand at 880.671 kb on - strand at 880.671 kb on - strand at 880.676 kb on + strand at 880.769 kb on + strand, within SMa1587 at 880.797 kb on + strand, within SMa1587 at 880.797 kb on + strand, within SMa1587 at 880.797 kb on + strand, within SMa1587 at 880.797 kb on + strand, within SMa1587 at 880.798 kb on - strand, within SMa1587 at 880.875 kb on + strand, within SMa1587 at 880.876 kb on - strand, within SMa1587 at 880.940 kb on + strand, within SMa1587 at 880.940 kb on + strand, within SMa1587 at 880.941 kb on - strand, within SMa1587 at 881.120 kb on + strand, within SMa1587 at 881.121 kb on - strand, within SMa1587 at 881.196 kb on + strand, within SMa1587 at 881.197 kb on - strand, within SMa1587 at 881.213 kb on + strand, within SMa1587 at 881.214 kb on - strand, within SMa1587 at 881.403 kb on + strand, within SMa1587 at 881.404 kb on - strand, within SMa1587 at 881.526 kb on + strand, within SMa1587 at 881.526 kb on + strand, within SMa1587 at 881.526 kb on + strand, within SMa1587 at 881.527 kb on - strand, within SMa1587 at 881.527 kb on - strand, within SMa1587 at 881.528 kb on + strand, within SMa1587 at 881.550 kb on + strand, within SMa1587 at 881.551 kb on - strand, within SMa1587 at 881.571 kb on + strand, within SMa1587 at 881.702 kb on + strand, within SMa1587 at 881.777 kb on + strand, within SMa1587 at 881.778 kb on - strand, within SMa1587 at 881.796 kb on + strand, within SMa1587 at 881.796 kb on + strand, within SMa1587 at 881.797 kb on - strand, within SMa1587 at 881.892 kb on + strand at 881.892 kb on + strand at 881.892 kb on + strand at 881.893 kb on - strand at 881.893 kb on - strand at 881.893 kb on - strand at 881.989 kb on - strand at 882.126 kb on - strand at 882.308 kb on + strand at 882.353 kb on - strand at 882.375 kb on - strand at 882.383 kb on + strand at 882.395 kb on + strand at 882.463 kb on - strand at 882.523 kb on + strand at 882.523 kb on + strand at 882.523 kb on + strand at 882.523 kb on + strand at 882.523 kb on + strand at 882.523 kb on + strand at 882.524 kb on - strand at 882.524 kb on - strand at 882.528 kb on - strand at 882.547 kb on + strand at 882.632 kb on + strand at 882.632 kb on + strand at 882.651 kb on + strand at 882.651 kb on + strand at 882.652 kb on - strand at 882.652 kb on - strand at 882.685 kb on + strand at 882.712 kb on + strand at 882.877 kb on + strand at 882.878 kb on - strand at 882.912 kb on + strand at 882.912 kb on + strand at 882.913 kb on - strand at 882.968 kb on + strand at 882.968 kb on + strand at 882.969 kb on - strand at 882.969 kb on - strand at 882.969 kb on - strand at 883.015 kb on + strand at 883.016 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 879,650 + -3.3 879,651 - +0.9 879,651 - -0.7 879,689 + -0.1 879,689 + -0.1 879,696 + -0.1 879,697 - -2.4 879,714 + -0.6 879,715 - +0.7 880,018 + SMa1586 0.35 -0.4 880,019 - SMa1586 0.35 +0.8 880,038 - SMa1586 0.39 -3.3 880,038 - SMa1586 0.39 +0.9 880,041 - SMa1586 0.40 +2.7 880,150 - SMa1586 0.64 +0.3 880,150 - SMa1586 0.64 -1.0 880,151 + SMa1586 0.64 -0.1 880,239 + SMa1586 0.83 +0.3 880,330 + +3.9 880,330 + -1.1 880,331 - -2.9 880,335 - +0.9 880,335 - +1.0 880,453 + +0.7 880,454 - -1.1 880,454 - +0.5 880,465 - -0.5 880,498 + -0.1 880,499 - +0.9 880,499 - -0.0 880,671 - -0.4 880,671 - +2.9 880,676 + -0.3 880,769 + SMa1587 0.11 +0.1 880,797 + SMa1587 0.13 +1.1 880,797 + SMa1587 0.13 +0.1 880,797 + SMa1587 0.13 +0.3 880,797 + SMa1587 0.13 +1.4 880,798 - SMa1587 0.13 -0.9 880,875 + SMa1587 0.18 -1.1 880,876 - SMa1587 0.18 +1.5 880,940 + SMa1587 0.23 -0.3 880,940 + SMa1587 0.23 -0.2 880,941 - SMa1587 0.23 -0.1 881,120 + SMa1587 0.36 +1.2 881,121 - SMa1587 0.36 +0.0 881,196 + SMa1587 0.41 -0.9 881,197 - SMa1587 0.41 +2.7 881,213 + SMa1587 0.42 +0.7 881,214 - SMa1587 0.42 +1.3 881,403 + SMa1587 0.56 -0.4 881,404 - SMa1587 0.56 -3.5 881,526 + SMa1587 0.65 -0.6 881,526 + SMa1587 0.65 -0.5 881,526 + SMa1587 0.65 +0.2 881,527 - SMa1587 0.65 +0.4 881,527 - SMa1587 0.65 -0.5 881,528 + SMa1587 0.65 +1.0 881,550 + SMa1587 0.67 +1.0 881,551 - SMa1587 0.67 +0.1 881,571 + SMa1587 0.68 +1.1 881,702 + SMa1587 0.77 +1.6 881,777 + SMa1587 0.83 -1.9 881,778 - SMa1587 0.83 +1.1 881,796 + SMa1587 0.84 +2.5 881,796 + SMa1587 0.84 +1.3 881,797 - SMa1587 0.84 +0.1 881,892 + +0.7 881,892 + +0.9 881,892 + -0.9 881,893 - -0.2 881,893 - +0.2 881,893 - +1.2 881,989 - +0.8 882,126 - -5.1 882,308 + +0.9 882,353 - +1.5 882,375 - +1.5 882,383 + +1.4 882,395 + -1.8 882,463 - +1.1 882,523 + +0.1 882,523 + -0.5 882,523 + -0.2 882,523 + -0.5 882,523 + +0.9 882,523 + +0.3 882,524 - -4.0 882,524 - +1.4 882,528 - -0.7 882,547 + -0.4 882,632 + +0.3 882,632 + +1.0 882,651 + -0.0 882,651 + -0.1 882,652 - -1.0 882,652 - -1.4 882,685 + -0.5 882,712 + +0.3 882,877 + -0.8 882,878 - -0.9 882,912 + +0.6 882,912 + -1.4 882,913 - +1.9 882,968 + -1.5 882,968 + +2.2 882,969 - -2.6 882,969 - -0.8 882,969 - +1.1 883,015 + -2.9 883,016 - +1.6
Or see this region's nucleotide sequence