Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1561 and SMa1562 are separated by 54 nucleotides SMa1562 and SMa1564 are separated by 9 nucleotides
SMa1561: SMa1561 - chemotaxis protein CheB, at 864,232 to 865,296
SMa1561
SMa1562: SMa1562 - Pilus assembly protein, at 865,351 to 866,316
SMa1562
SMa1564: SMa1564 - Pilus assembly protein, at 866,326 to 867,327
SMa1564
Position (kb) 865
866
867 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 864.437 kb on + strand, within SMa1561 at 864.438 kb on - strand, within SMa1561 at 864.464 kb on + strand, within SMa1561 at 864.465 kb on - strand, within SMa1561 at 864.626 kb on + strand, within SMa1561 at 864.920 kb on - strand, within SMa1561 at 864.920 kb on - strand, within SMa1561 at 864.920 kb on - strand, within SMa1561 at 864.969 kb on - strand, within SMa1561 at 865.019 kb on - strand, within SMa1561 at 865.232 kb on + strand at 865.232 kb on + strand at 865.352 kb on + strand at 865.353 kb on - strand at 865.637 kb on + strand, within SMa1562 at 865.638 kb on - strand, within SMa1562 at 865.752 kb on + strand, within SMa1562 at 865.848 kb on - strand, within SMa1562 at 865.926 kb on - strand, within SMa1562 at 866.004 kb on + strand, within SMa1562 at 866.005 kb on - strand, within SMa1562 at 866.116 kb on + strand, within SMa1562 at 866.117 kb on - strand, within SMa1562 at 866.219 kb on + strand, within SMa1562 at 866.219 kb on + strand, within SMa1562 at 866.220 kb on - strand at 866.220 kb on - strand at 866.220 kb on - strand at 866.220 kb on - strand at 866.269 kb on + strand at 866.269 kb on + strand at 866.269 kb on + strand at 866.269 kb on + strand at 866.269 kb on + strand at 866.269 kb on + strand at 866.438 kb on + strand, within SMa1564 at 866.438 kb on + strand, within SMa1564 at 866.438 kb on + strand, within SMa1564 at 866.892 kb on - strand, within SMa1564 at 866.892 kb on - strand, within SMa1564 at 866.963 kb on - strand, within SMa1564 at 866.963 kb on - strand, within SMa1564 at 866.991 kb on + strand, within SMa1564 at 867.245 kb on + strand at 867.245 kb on + strand at 867.246 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 864,437 + SMa1561 0.19 -2.0 864,438 - SMa1561 0.19 +0.1 864,464 + SMa1561 0.22 -0.7 864,465 - SMa1561 0.22 +1.2 864,626 + SMa1561 0.37 +1.8 864,920 - SMa1561 0.65 -1.2 864,920 - SMa1561 0.65 +0.9 864,920 - SMa1561 0.65 +0.8 864,969 - SMa1561 0.69 -0.6 865,019 - SMa1561 0.74 +1.0 865,232 + -1.9 865,232 + -3.4 865,352 + +2.5 865,353 - -2.1 865,637 + SMa1562 0.30 +1.6 865,638 - SMa1562 0.30 -2.6 865,752 + SMa1562 0.42 +0.9 865,848 - SMa1562 0.51 -1.8 865,926 - SMa1562 0.60 -1.8 866,004 + SMa1562 0.68 +0.3 866,005 - SMa1562 0.68 -0.3 866,116 + SMa1562 0.79 +1.9 866,117 - SMa1562 0.79 +1.4 866,219 + SMa1562 0.90 -1.4 866,219 + SMa1562 0.90 +0.4 866,220 - -0.0 866,220 - +0.9 866,220 - +0.5 866,220 - -1.1 866,269 + -1.7 866,269 + -0.1 866,269 + -1.8 866,269 + +0.4 866,269 + -0.5 866,269 + -0.5 866,438 + SMa1564 0.11 -0.2 866,438 + SMa1564 0.11 +0.6 866,438 + SMa1564 0.11 -1.3 866,892 - SMa1564 0.56 -0.1 866,892 - SMa1564 0.56 -0.2 866,963 - SMa1564 0.64 -0.9 866,963 - SMa1564 0.64 -1.7 866,991 + SMa1564 0.66 -0.4 867,245 + -5.1 867,245 + -0.7 867,246 - -0.1
Or see this region's nucleotide sequence