Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1552 and SMa1554 overlap by 4 nucleotides SMa1554 and SMa1556 overlap by 68 nucleotides
SMa1552: SMa1552 - chemotaxis protein CheR, at 858,465 to 859,826
SMa1552
SMa1554: SMa1554 - chemotaxis protein, at 859,823 to 860,491
SMa1554
SMa1556: SMa1556 - Methyl-accepting chemotaxis protein, at 860,424 to 862,109
SMa1556
Position (kb) 859
860
861 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 858.826 kb on + strand, within SMa1552 at 858.826 kb on + strand, within SMa1552 at 858.827 kb on - strand, within SMa1552 at 858.827 kb on - strand, within SMa1552 at 859.116 kb on + strand, within SMa1552 at 859.221 kb on + strand, within SMa1552 at 859.221 kb on + strand, within SMa1552 at 859.292 kb on + strand, within SMa1552 at 859.292 kb on + strand, within SMa1552 at 859.293 kb on - strand, within SMa1552 at 859.597 kb on - strand, within SMa1552 at 859.597 kb on - strand, within SMa1552 at 859.630 kb on + strand, within SMa1552 at 859.631 kb on - strand, within SMa1552 at 859.631 kb on - strand, within SMa1552 at 859.631 kb on - strand, within SMa1552 at 859.631 kb on - strand, within SMa1552 at 859.706 kb on - strand at 859.796 kb on - strand at 859.883 kb on - strand at 859.883 kb on - strand at 859.897 kb on - strand, within SMa1554 at 859.897 kb on - strand, within SMa1554 at 859.949 kb on + strand, within SMa1554 at 859.949 kb on + strand, within SMa1554 at 859.949 kb on + strand, within SMa1554 at 859.950 kb on - strand, within SMa1554 at 860.067 kb on - strand, within SMa1554 at 860.079 kb on + strand, within SMa1554 at 860.139 kb on - strand, within SMa1554 at 860.139 kb on - strand, within SMa1554 at 860.489 kb on + strand at 860.496 kb on + strand at 860.496 kb on + strand at 860.496 kb on + strand at 860.524 kb on + strand at 860.524 kb on + strand at 860.643 kb on + strand, within SMa1556 at 860.644 kb on - strand, within SMa1556 at 860.644 kb on - strand, within SMa1556 at 860.644 kb on - strand, within SMa1556 at 860.644 kb on - strand, within SMa1556 at 860.694 kb on - strand, within SMa1556 at 861.444 kb on + strand, within SMa1556
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 858,826 + SMa1552 0.27 +0.5 858,826 + SMa1552 0.27 -0.7 858,827 - SMa1552 0.27 -0.7 858,827 - SMa1552 0.27 -0.3 859,116 + SMa1552 0.48 -2.1 859,221 + SMa1552 0.56 -0.6 859,221 + SMa1552 0.56 +0.6 859,292 + SMa1552 0.61 -0.9 859,292 + SMa1552 0.61 -1.3 859,293 - SMa1552 0.61 -0.5 859,597 - SMa1552 0.83 -2.1 859,597 - SMa1552 0.83 +0.3 859,630 + SMa1552 0.86 -1.5 859,631 - SMa1552 0.86 -0.4 859,631 - SMa1552 0.86 +0.9 859,631 - SMa1552 0.86 -0.3 859,631 - SMa1552 0.86 +0.6 859,706 - -1.8 859,796 - -0.5 859,883 - -0.1 859,883 - -1.8 859,897 - SMa1554 0.11 +4.5 859,897 - SMa1554 0.11 +1.4 859,949 + SMa1554 0.19 +0.9 859,949 + SMa1554 0.19 -0.5 859,949 + SMa1554 0.19 -0.6 859,950 - SMa1554 0.19 -0.2 860,067 - SMa1554 0.36 +2.4 860,079 + SMa1554 0.38 +0.7 860,139 - SMa1554 0.47 -2.6 860,139 - SMa1554 0.47 +1.1 860,489 + -4.0 860,496 + +0.7 860,496 + -0.7 860,496 + +0.1 860,524 + +0.9 860,524 + -1.5 860,643 + SMa1556 0.13 -1.1 860,644 - SMa1556 0.13 -0.2 860,644 - SMa1556 0.13 +0.2 860,644 - SMa1556 0.13 +1.9 860,644 - SMa1556 0.13 -2.9 860,694 - SMa1556 0.16 -0.2 861,444 + SMa1556 0.60 +3.5
Or see this region's nucleotide sequence