Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1507 and SMa1509 are separated by 84 nucleotides SMa1509 and SMa1513 are separated by 25 nucleotides
SMa1507: SMa1507 - hypothetical protein, at 831,222 to 832,316
SMa1507
SMa1509: SMa1509 - ATP transporter ATP-binding protein, at 832,401 to 833,936
SMa1509
SMa1513: SMa1513 - ABC transporter permease, at 833,962 to 834,984
SMa1513
Position (kb) 832
833
834 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 831.639 kb on + strand, within SMa1507 at 831.643 kb on - strand, within SMa1507 at 831.681 kb on - strand, within SMa1507 at 831.681 kb on - strand, within SMa1507 at 831.681 kb on - strand, within SMa1507 at 831.681 kb on - strand, within SMa1507 at 831.851 kb on + strand, within SMa1507 at 831.910 kb on + strand, within SMa1507 at 831.910 kb on + strand, within SMa1507 at 831.998 kb on + strand, within SMa1507 at 831.999 kb on - strand, within SMa1507 at 832.113 kb on + strand, within SMa1507 at 832.113 kb on + strand, within SMa1507 at 832.114 kb on - strand, within SMa1507 at 832.114 kb on - strand, within SMa1507 at 832.495 kb on + strand at 832.495 kb on + strand at 832.496 kb on - strand at 832.552 kb on - strand at 832.552 kb on - strand at 832.584 kb on + strand, within SMa1509 at 832.584 kb on + strand, within SMa1509 at 832.654 kb on - strand, within SMa1509 at 832.971 kb on + strand, within SMa1509 at 832.972 kb on - strand, within SMa1509 at 832.972 kb on - strand, within SMa1509 at 832.973 kb on + strand, within SMa1509 at 832.973 kb on + strand, within SMa1509 at 833.196 kb on + strand, within SMa1509 at 833.196 kb on + strand, within SMa1509 at 833.197 kb on - strand, within SMa1509 at 833.197 kb on - strand, within SMa1509 at 833.218 kb on + strand, within SMa1509 at 833.218 kb on + strand, within SMa1509 at 833.218 kb on + strand, within SMa1509 at 833.218 kb on + strand, within SMa1509 at 833.218 kb on + strand, within SMa1509 at 833.543 kb on + strand, within SMa1509 at 834.240 kb on - strand, within SMa1513 at 834.383 kb on - strand, within SMa1513 at 834.383 kb on - strand, within SMa1513 at 834.383 kb on - strand, within SMa1513 at 834.448 kb on + strand, within SMa1513 at 834.499 kb on + strand, within SMa1513 at 834.499 kb on + strand, within SMa1513 at 834.586 kb on + strand, within SMa1513 at 834.587 kb on - strand, within SMa1513 at 834.587 kb on - strand, within SMa1513 at 834.628 kb on + strand, within SMa1513 at 834.628 kb on + strand, within SMa1513
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 831,639 + SMa1507 0.38 +0.7 831,643 - SMa1507 0.38 +1.4 831,681 - SMa1507 0.42 -2.6 831,681 - SMa1507 0.42 +0.5 831,681 - SMa1507 0.42 +0.3 831,681 - SMa1507 0.42 -1.1 831,851 + SMa1507 0.57 -0.9 831,910 + SMa1507 0.63 +1.3 831,910 + SMa1507 0.63 -0.2 831,998 + SMa1507 0.71 -0.5 831,999 - SMa1507 0.71 +0.2 832,113 + SMa1507 0.81 -3.4 832,113 + SMa1507 0.81 -0.3 832,114 - SMa1507 0.81 -2.7 832,114 - SMa1507 0.81 +0.2 832,495 + -0.5 832,495 + +2.5 832,496 - +0.2 832,552 - +0.3 832,552 - +0.4 832,584 + SMa1509 0.12 +0.9 832,584 + SMa1509 0.12 -1.0 832,654 - SMa1509 0.16 +3.5 832,971 + SMa1509 0.37 -2.8 832,972 - SMa1509 0.37 -0.7 832,972 - SMa1509 0.37 +1.0 832,973 + SMa1509 0.37 +0.4 832,973 + SMa1509 0.37 +0.9 833,196 + SMa1509 0.52 -2.4 833,196 + SMa1509 0.52 +0.6 833,197 - SMa1509 0.52 +1.4 833,197 - SMa1509 0.52 -3.4 833,218 + SMa1509 0.53 +0.9 833,218 + SMa1509 0.53 -0.7 833,218 + SMa1509 0.53 +0.9 833,218 + SMa1509 0.53 -0.1 833,218 + SMa1509 0.53 -1.4 833,543 + SMa1509 0.74 +0.0 834,240 - SMa1513 0.27 +0.9 834,383 - SMa1513 0.41 -0.7 834,383 - SMa1513 0.41 +0.5 834,383 - SMa1513 0.41 -3.4 834,448 + SMa1513 0.48 -1.4 834,499 + SMa1513 0.52 -0.7 834,499 + SMa1513 0.52 -1.9 834,586 + SMa1513 0.61 -0.2 834,587 - SMa1513 0.61 -0.9 834,587 - SMa1513 0.61 -1.3 834,628 + SMa1513 0.65 +0.8 834,628 + SMa1513 0.65 -1.1
Or see this region's nucleotide sequence