Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1391 and SMa1394 are separated by 16 nucleotides SMa1394 and SMa1397 are separated by 1 nucleotides SMa1397 and SMa1398 are separated by 8 nucleotides SMa1398 and SMa1400 overlap by 4 nucleotides
SMa1391: SMa1391 - EtfB2 electron transport flavoprotein, beta subunit, at 766,174 to 766,923
SMa1391
SMa1394: SMa1394 - hypothetical protein, at 766,940 to 767,797
SMa1394
SMa1397: SMa1397 - hypothetical protein, at 767,799 to 768,947
SMa1397
SMa1398: SMa1398 - 3-ketoacyl-ACP reductase, at 768,956 to 769,735
SMa1398
SMa1400: SMa1400 - acyl-CoA dehydrogenase, at 769,732 to 770,874
SMa1400
Position (kb) 767
768
769 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 766.886 kb on + strand at 766.915 kb on + strand at 767.160 kb on + strand, within SMa1394 at 767.160 kb on + strand, within SMa1394 at 767.161 kb on - strand, within SMa1394 at 767.166 kb on + strand, within SMa1394 at 767.167 kb on - strand, within SMa1394 at 767.229 kb on + strand, within SMa1394 at 767.229 kb on + strand, within SMa1394 at 767.230 kb on - strand, within SMa1394 at 767.245 kb on + strand, within SMa1394 at 767.325 kb on + strand, within SMa1394 at 767.468 kb on + strand, within SMa1394 at 767.809 kb on + strand at 767.995 kb on + strand, within SMa1397 at 767.995 kb on + strand, within SMa1397 at 767.996 kb on - strand, within SMa1397 at 768.068 kb on + strand, within SMa1397 at 768.068 kb on + strand, within SMa1397 at 768.185 kb on - strand, within SMa1397 at 768.205 kb on + strand, within SMa1397 at 768.206 kb on - strand, within SMa1397 at 768.206 kb on - strand, within SMa1397 at 768.239 kb on + strand, within SMa1397 at 768.276 kb on + strand, within SMa1397 at 768.439 kb on + strand, within SMa1397 at 768.451 kb on + strand, within SMa1397 at 768.547 kb on + strand, within SMa1397 at 768.548 kb on - strand, within SMa1397 at 768.905 kb on - strand at 768.905 kb on - strand at 769.113 kb on + strand, within SMa1398 at 769.249 kb on - strand, within SMa1398 at 769.249 kb on - strand, within SMa1398 at 769.829 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 766,886 + -1.9 766,915 + -0.5 767,160 + SMa1394 0.26 -1.9 767,160 + SMa1394 0.26 +0.4 767,161 - SMa1394 0.26 -0.6 767,166 + SMa1394 0.26 -1.9 767,167 - SMa1394 0.26 -0.4 767,229 + SMa1394 0.34 +0.6 767,229 + SMa1394 0.34 -0.1 767,230 - SMa1394 0.34 -0.7 767,245 + SMa1394 0.36 +0.1 767,325 + SMa1394 0.45 -0.4 767,468 + SMa1394 0.62 -0.1 767,809 + -3.1 767,995 + SMa1397 0.17 +3.1 767,995 + SMa1397 0.17 +0.3 767,996 - SMa1397 0.17 -0.6 768,068 + SMa1397 0.23 -0.2 768,068 + SMa1397 0.23 +0.9 768,185 - SMa1397 0.34 +0.7 768,205 + SMa1397 0.35 -1.6 768,206 - SMa1397 0.35 +0.0 768,206 - SMa1397 0.35 +0.1 768,239 + SMa1397 0.38 +0.4 768,276 + SMa1397 0.42 -2.2 768,439 + SMa1397 0.56 +0.6 768,451 + SMa1397 0.57 +0.2 768,547 + SMa1397 0.65 -1.1 768,548 - SMa1397 0.65 +0.9 768,905 - -0.7 768,905 - -1.9 769,113 + SMa1398 0.20 +0.4 769,249 - SMa1398 0.38 -0.7 769,249 - SMa1398 0.38 -2.4 769,829 + -1.7
Or see this region's nucleotide sequence