Strain Fitness in Sinorhizobium meliloti 1021 around SMa1353

Experiment: Polymyxin B sulfate 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1351 and SMa1353 are separated by 9 nucleotidesSMa1353 and SMa1354 are separated by 313 nucleotides SMa1351: SMa1351 - enolase, at 738,839 to 740,047 SMa1351 SMa1353: SMa1353 - epimerase, at 740,057 to 740,944 SMa1353 SMa1354: SMa1354 - Isomerase, at 741,258 to 742,109 SMa1354 Position (kb) 740 741Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 739.121 kb on - strand, within SMa1351at 739.267 kb on + strand, within SMa1351at 739.267 kb on + strand, within SMa1351at 739.268 kb on - strand, within SMa1351at 739.379 kb on - strand, within SMa1351at 739.434 kb on + strand, within SMa1351at 739.434 kb on + strand, within SMa1351at 739.498 kb on - strand, within SMa1351at 739.551 kb on + strand, within SMa1351at 739.551 kb on + strand, within SMa1351at 739.551 kb on + strand, within SMa1351at 739.551 kb on + strand, within SMa1351at 739.573 kb on + strand, within SMa1351at 739.574 kb on - strand, within SMa1351at 739.654 kb on + strand, within SMa1351at 739.693 kb on + strand, within SMa1351at 739.737 kb on + strand, within SMa1351at 739.738 kb on - strand, within SMa1351at 739.762 kb on + strand, within SMa1351at 739.803 kb on + strand, within SMa1351at 739.831 kb on - strand, within SMa1351at 739.967 kb on - strandat 739.967 kb on - strandat 740.173 kb on + strand, within SMa1353at 740.198 kb on - strand, within SMa1353at 740.391 kb on + strand, within SMa1353at 740.391 kb on + strand, within SMa1353at 740.391 kb on + strand, within SMa1353at 740.391 kb on + strand, within SMa1353at 740.391 kb on + strand, within SMa1353at 740.391 kb on + strand, within SMa1353at 740.392 kb on - strand, within SMa1353at 740.392 kb on - strand, within SMa1353at 740.392 kb on - strand, within SMa1353at 740.392 kb on - strand, within SMa1353at 740.392 kb on - strand, within SMa1353at 740.392 kb on - strand, within SMa1353at 740.392 kb on - strand, within SMa1353at 740.392 kb on - strand, within SMa1353at 740.499 kb on + strand, within SMa1353at 740.645 kb on + strand, within SMa1353at 740.646 kb on - strand, within SMa1353at 740.687 kb on + strand, within SMa1353at 740.688 kb on - strand, within SMa1353at 740.688 kb on - strand, within SMa1353at 740.689 kb on + strand, within SMa1353at 740.690 kb on - strand, within SMa1353at 740.703 kb on + strand, within SMa1353at 740.704 kb on - strand, within SMa1353at 740.704 kb on - strand, within SMa1353at 740.874 kb on + strandat 740.945 kb on - strandat 740.967 kb on - strandat 740.967 kb on - strandat 741.067 kb on + strandat 741.131 kb on + strandat 741.269 kb on + strandat 741.269 kb on + strandat 741.269 kb on + strandat 741.421 kb on + strand, within SMa1354at 741.422 kb on - strand, within SMa1354at 741.422 kb on - strand, within SMa1354at 741.513 kb on + strand, within SMa1354at 741.514 kb on - strand, within SMa1354at 741.514 kb on - strand, within SMa1354at 741.514 kb on - strand, within SMa1354at 741.582 kb on - strand, within SMa1354at 741.587 kb on - strand, within SMa1354at 741.747 kb on - strand, within SMa1354at 741.755 kb on + strand, within SMa1354at 741.755 kb on + strand, within SMa1354at 741.755 kb on + strand, within SMa1354at 741.755 kb on + strand, within SMa1354at 741.792 kb on + strand, within SMa1354at 741.792 kb on + strand, within SMa1354at 741.792 kb on + strand, within SMa1354at 741.792 kb on + strand, within SMa1354at 741.792 kb on + strand, within SMa1354at 741.792 kb on + strand, within SMa1354at 741.793 kb on - strand, within SMa1354at 741.793 kb on - strand, within SMa1354at 741.793 kb on - strand, within SMa1354

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml
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739,121 - SMa1351 0.23 +0.5
739,267 + SMa1351 0.35 +0.8
739,267 + SMa1351 0.35 -1.7
739,268 - SMa1351 0.35 -0.7
739,379 - SMa1351 0.45 +0.7
739,434 + SMa1351 0.49 -0.6
739,434 + SMa1351 0.49 +0.1
739,498 - SMa1351 0.55 -1.6
739,551 + SMa1351 0.59 +0.1
739,551 + SMa1351 0.59 -0.8
739,551 + SMa1351 0.59 -0.7
739,551 + SMa1351 0.59 -0.0
739,573 + SMa1351 0.61 +1.0
739,574 - SMa1351 0.61 -0.2
739,654 + SMa1351 0.67 +1.9
739,693 + SMa1351 0.71 +2.9
739,737 + SMa1351 0.74 -0.2
739,738 - SMa1351 0.74 +0.7
739,762 + SMa1351 0.76 -1.1
739,803 + SMa1351 0.80 +3.5
739,831 - SMa1351 0.82 +1.6
739,967 - -1.1
739,967 - +0.7
740,173 + SMa1353 0.13 +0.2
740,198 - SMa1353 0.16 +0.4
740,391 + SMa1353 0.38 +2.5
740,391 + SMa1353 0.38 -0.7
740,391 + SMa1353 0.38 +0.9
740,391 + SMa1353 0.38 -0.7
740,391 + SMa1353 0.38 -0.3
740,391 + SMa1353 0.38 +2.3
740,392 - SMa1353 0.38 -0.7
740,392 - SMa1353 0.38 +0.7
740,392 - SMa1353 0.38 -0.0
740,392 - SMa1353 0.38 -0.4
740,392 - SMa1353 0.38 +0.4
740,392 - SMa1353 0.38 -0.1
740,392 - SMa1353 0.38 -0.7
740,392 - SMa1353 0.38 +1.5
740,499 + SMa1353 0.50 +0.6
740,645 + SMa1353 0.66 -0.7
740,646 - SMa1353 0.66 +1.1
740,687 + SMa1353 0.71 +0.3
740,688 - SMa1353 0.71 +0.6
740,688 - SMa1353 0.71 +0.9
740,689 + SMa1353 0.71 -0.1
740,690 - SMa1353 0.71 -0.7
740,703 + SMa1353 0.73 +0.6
740,704 - SMa1353 0.73 +0.9
740,704 - SMa1353 0.73 +0.2
740,874 + +1.0
740,945 - +0.7
740,967 - +0.6
740,967 - +1.6
741,067 + +0.9
741,131 + -0.3
741,269 + -1.9
741,269 + +0.9
741,269 + +0.7
741,421 + SMa1354 0.19 +4.0
741,422 - SMa1354 0.19 +0.9
741,422 - SMa1354 0.19 +2.0
741,513 + SMa1354 0.30 +0.1
741,514 - SMa1354 0.30 +0.3
741,514 - SMa1354 0.30 -2.4
741,514 - SMa1354 0.30 -0.3
741,582 - SMa1354 0.38 -1.4
741,587 - SMa1354 0.39 -0.1
741,747 - SMa1354 0.57 -1.7
741,755 + SMa1354 0.58 -0.2
741,755 + SMa1354 0.58 -1.9
741,755 + SMa1354 0.58 +0.3
741,755 + SMa1354 0.58 +0.6
741,792 + SMa1354 0.63 -0.9
741,792 + SMa1354 0.63 -1.6
741,792 + SMa1354 0.63 -0.2
741,792 + SMa1354 0.63 -2.5
741,792 + SMa1354 0.63 -1.9
741,792 + SMa1354 0.63 +2.1
741,793 - SMa1354 0.63 -0.1
741,793 - SMa1354 0.63 +0.5
741,793 - SMa1354 0.63 +1.2

Or see this region's nucleotide sequence