Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1166 and SMa1168 are separated by 51 nucleotides SMa1168 and SMa1169 are separated by 83 nucleotides SMa1169 and SMa1170 are separated by 61 nucleotides SMa1170 and SMa1171 are separated by 2 nucleotides
SMa1166: SMa1166 - hydrolase, at 639,902 to 640,945
SMa1166
SMa1168: SMa1168 - Dehydrogenase, FAD-dependent, at 640,997 to 641,578
SMa1168
SMa1169: SMa1169 - hypothetical protein, at 641,662 to 642,003
SMa1169
SMa1170: SMa1170 - hypothetical protein, at 642,065 to 642,382
SMa1170
SMa1171: SMa1171 - hypothetical protein, at 642,385 to 642,645
SMa1171
Position (kb) 640
641
642 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 640.067 kb on + strand, within SMa1166 at 640.630 kb on + strand, within SMa1166 at 640.630 kb on + strand, within SMa1166 at 640.740 kb on + strand, within SMa1166 at 640.952 kb on - strand at 641.075 kb on + strand, within SMa1168 at 641.119 kb on - strand, within SMa1168 at 641.324 kb on + strand, within SMa1168 at 641.324 kb on + strand, within SMa1168 at 641.559 kb on - strand at 641.875 kb on + strand, within SMa1169 at 641.875 kb on + strand, within SMa1169 at 641.875 kb on + strand, within SMa1169 at 641.875 kb on + strand, within SMa1169 at 641.875 kb on + strand, within SMa1169 at 641.928 kb on - strand, within SMa1169 at 642.008 kb on + strand at 642.050 kb on + strand at 642.075 kb on + strand at 642.075 kb on + strand at 642.181 kb on + strand, within SMa1170 at 642.226 kb on + strand, within SMa1170 at 642.327 kb on + strand, within SMa1170 at 642.365 kb on + strand at 642.369 kb on + strand at 642.369 kb on + strand at 642.370 kb on - strand at 642.370 kb on - strand at 642.381 kb on - strand at 642.381 kb on - strand at 642.386 kb on + strand at 642.464 kb on + strand, within SMa1171 at 642.465 kb on - strand, within SMa1171 at 642.465 kb on - strand, within SMa1171 at 642.471 kb on - strand, within SMa1171
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 640,067 + SMa1166 0.16 +0.2 640,630 + SMa1166 0.70 +0.1 640,630 + SMa1166 0.70 +1.3 640,740 + SMa1166 0.80 -0.6 640,952 - -2.1 641,075 + SMa1168 0.13 -1.7 641,119 - SMa1168 0.21 -1.9 641,324 + SMa1168 0.56 -0.7 641,324 + SMa1168 0.56 +0.1 641,559 - +1.5 641,875 + SMa1169 0.62 -2.8 641,875 + SMa1169 0.62 -0.2 641,875 + SMa1169 0.62 -0.1 641,875 + SMa1169 0.62 +0.4 641,875 + SMa1169 0.62 -0.3 641,928 - SMa1169 0.78 +0.4 642,008 + +0.1 642,050 + +2.6 642,075 + -0.8 642,075 + +0.4 642,181 + SMa1170 0.36 -1.6 642,226 + SMa1170 0.51 -0.6 642,327 + SMa1170 0.82 -0.0 642,365 + -0.3 642,369 + -4.1 642,369 + -0.2 642,370 - +0.3 642,370 - +0.5 642,381 - +1.6 642,381 - +2.9 642,386 + +0.3 642,464 + SMa1171 0.30 +0.0 642,465 - SMa1171 0.31 -1.8 642,465 - SMa1171 0.31 -1.8 642,471 - SMa1171 0.33 +0.5
Or see this region's nucleotide sequence