Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1159 and SMa1160 overlap by 53 nucleotides SMa1160 and SMa1161 overlap by 4 nucleotides SMa1161 and SMa1162 are separated by 151 nucleotides SMa1162 and SMa1163 are separated by 129 nucleotides
SMa1159: SMa1159 - hypothetical protein, at 635,179 to 635,622
SMa1159
SMa1160: SMa1160 - hypothetical protein, at 635,570 to 636,151
SMa1160
SMa1161: SMa1161 - hypothetical protein, at 636,148 to 636,429
SMa1161
SMa1162: SMa1162 - hypothetical protein, at 636,581 to 637,258
SMa1162
SMa1163: SMa1163 - Cation transport P-type ATPase, at 637,388 to 639,787
SMa1163
Position (kb) 636
637 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 635.234 kb on - strand, within SMa1159 at 635.236 kb on - strand, within SMa1159 at 635.260 kb on + strand, within SMa1159 at 635.261 kb on - strand, within SMa1159 at 635.311 kb on + strand, within SMa1159 at 635.323 kb on + strand, within SMa1159 at 635.431 kb on + strand, within SMa1159 at 635.431 kb on + strand, within SMa1159 at 635.432 kb on - strand, within SMa1159 at 635.437 kb on - strand, within SMa1159 at 635.437 kb on - strand, within SMa1159 at 635.437 kb on - strand, within SMa1159 at 635.449 kb on - strand, within SMa1159 at 635.491 kb on + strand, within SMa1159 at 635.571 kb on + strand at 635.572 kb on - strand at 635.687 kb on + strand, within SMa1160 at 635.856 kb on + strand, within SMa1160 at 635.856 kb on + strand, within SMa1160 at 635.915 kb on - strand, within SMa1160 at 635.915 kb on - strand, within SMa1160 at 636.037 kb on + strand, within SMa1160 at 636.097 kb on - strand at 636.243 kb on + strand, within SMa1161 at 636.243 kb on + strand, within SMa1161 at 636.243 kb on + strand, within SMa1161 at 636.243 kb on + strand, within SMa1161 at 636.281 kb on - strand, within SMa1161 at 636.309 kb on - strand, within SMa1161 at 636.309 kb on - strand, within SMa1161 at 636.418 kb on - strand at 636.601 kb on + strand at 636.645 kb on - strand at 636.831 kb on + strand, within SMa1162 at 636.831 kb on + strand, within SMa1162 at 636.831 kb on + strand, within SMa1162 at 636.831 kb on + strand, within SMa1162 at 636.831 kb on + strand, within SMa1162 at 636.831 kb on + strand, within SMa1162 at 636.831 kb on + strand, within SMa1162 at 636.832 kb on - strand, within SMa1162 at 636.836 kb on + strand, within SMa1162 at 636.837 kb on - strand, within SMa1162 at 636.837 kb on - strand, within SMa1162 at 636.933 kb on - strand, within SMa1162 at 637.147 kb on + strand, within SMa1162 at 637.147 kb on + strand, within SMa1162 at 637.184 kb on + strand, within SMa1162 at 637.229 kb on - strand at 637.250 kb on + strand at 637.289 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 635,234 - SMa1159 0.12 -0.5 635,236 - SMa1159 0.13 +0.3 635,260 + SMa1159 0.18 -0.2 635,261 - SMa1159 0.18 -0.2 635,311 + SMa1159 0.30 +1.0 635,323 + SMa1159 0.32 +1.1 635,431 + SMa1159 0.57 -0.4 635,431 + SMa1159 0.57 +0.3 635,432 - SMa1159 0.57 +0.4 635,437 - SMa1159 0.58 +0.4 635,437 - SMa1159 0.58 -2.0 635,437 - SMa1159 0.58 +1.2 635,449 - SMa1159 0.61 -0.3 635,491 + SMa1159 0.70 -0.8 635,571 + +0.8 635,572 - -2.2 635,687 + SMa1160 0.20 +1.2 635,856 + SMa1160 0.49 -4.1 635,856 + SMa1160 0.49 +0.5 635,915 - SMa1160 0.59 +0.4 635,915 - SMa1160 0.59 +2.4 636,037 + SMa1160 0.80 +0.5 636,097 - -1.0 636,243 + SMa1161 0.34 -0.4 636,243 + SMa1161 0.34 +0.4 636,243 + SMa1161 0.34 -1.2 636,243 + SMa1161 0.34 -0.8 636,281 - SMa1161 0.47 -1.6 636,309 - SMa1161 0.57 -0.5 636,309 - SMa1161 0.57 +1.8 636,418 - -0.0 636,601 + +0.6 636,645 - -0.8 636,831 + SMa1162 0.37 -1.6 636,831 + SMa1162 0.37 -1.6 636,831 + SMa1162 0.37 +0.3 636,831 + SMa1162 0.37 -1.0 636,831 + SMa1162 0.37 -2.0 636,831 + SMa1162 0.37 -0.5 636,831 + SMa1162 0.37 -3.6 636,832 - SMa1162 0.37 +0.1 636,836 + SMa1162 0.38 -0.8 636,837 - SMa1162 0.38 -0.0 636,837 - SMa1162 0.38 -0.1 636,933 - SMa1162 0.52 -0.5 637,147 + SMa1162 0.83 +0.6 637,147 + SMa1162 0.83 +3.1 637,184 + SMa1162 0.89 -1.5 637,229 - +1.1 637,250 + +2.8 637,289 + -0.1
Or see this region's nucleotide sequence