Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1149 and SMa1151 are separated by 58 nucleotides SMa1151 and SMa1153 are separated by 145 nucleotides SMa1153 and SMa1154 are separated by 92 nucleotides SMa1154 and SMa1155 are separated by 75 nucleotides
SMa1149: SMa1149 - hypothetical protein, at 627,474 to 628,307
SMa1149
SMa1151: SMa1151 - hypothetical protein, at 628,366 to 628,821
SMa1151
SMa1153: SMa1153 - hypothetical protein, at 628,967 to 629,641
SMa1153
SMa1154: SMa1154 - hypothetical protein, at 629,734 to 630,129
SMa1154
SMa1155: SMa1155 - cation transport P-type ATPase, at 630,205 to 632,907
SMa1155
Position (kb) 628
629
630 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 628.092 kb on + strand, within SMa1149 at 628.092 kb on + strand, within SMa1149 at 628.093 kb on - strand, within SMa1149 at 628.093 kb on - strand, within SMa1149 at 628.097 kb on - strand, within SMa1149 at 628.097 kb on - strand, within SMa1149 at 628.311 kb on - strand at 628.311 kb on - strand at 628.326 kb on - strand at 628.328 kb on - strand at 628.340 kb on + strand at 628.357 kb on + strand at 628.357 kb on + strand at 628.358 kb on - strand at 628.576 kb on + strand, within SMa1151 at 628.576 kb on + strand, within SMa1151 at 628.631 kb on - strand, within SMa1151 at 628.631 kb on - strand, within SMa1151 at 628.631 kb on - strand, within SMa1151 at 628.631 kb on - strand, within SMa1151 at 628.709 kb on + strand, within SMa1151 at 628.709 kb on + strand, within SMa1151 at 628.709 kb on + strand, within SMa1151 at 628.710 kb on - strand, within SMa1151 at 628.725 kb on + strand, within SMa1151 at 628.727 kb on + strand, within SMa1151 at 628.788 kb on + strand at 628.789 kb on - strand at 628.789 kb on - strand at 628.870 kb on - strand at 628.870 kb on - strand at 628.925 kb on + strand at 628.925 kb on + strand at 628.925 kb on + strand at 628.926 kb on - strand at 628.926 kb on - strand at 628.926 kb on - strand at 628.949 kb on + strand at 629.015 kb on + strand at 629.015 kb on + strand at 629.015 kb on + strand at 629.093 kb on + strand, within SMa1153 at 629.094 kb on - strand, within SMa1153 at 629.094 kb on - strand, within SMa1153 at 629.512 kb on - strand, within SMa1153 at 629.684 kb on + strand at 629.730 kb on + strand at 629.730 kb on + strand at 629.730 kb on + strand at 629.731 kb on - strand at 629.733 kb on + strand at 629.734 kb on - strand at 629.745 kb on + strand at 629.746 kb on - strand at 629.924 kb on - strand, within SMa1154 at 630.008 kb on - strand, within SMa1154 at 630.168 kb on - strand at 630.397 kb on + strand at 630.398 kb on - strand at 630.398 kb on - strand at 630.399 kb on + strand at 630.491 kb on + strand, within SMa1155 at 630.492 kb on - strand, within SMa1155 at 630.492 kb on - strand, within SMa1155 at 630.492 kb on - strand, within SMa1155
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 628,092 + SMa1149 0.74 +1.3 628,092 + SMa1149 0.74 -1.3 628,093 - SMa1149 0.74 +1.7 628,093 - SMa1149 0.74 +0.4 628,097 - SMa1149 0.75 +0.8 628,097 - SMa1149 0.75 +4.0 628,311 - -0.0 628,311 - -0.2 628,326 - -2.3 628,328 - -1.8 628,340 + +0.4 628,357 + +0.4 628,357 + +1.6 628,358 - -1.2 628,576 + SMa1151 0.46 -0.1 628,576 + SMa1151 0.46 +0.4 628,631 - SMa1151 0.58 -3.8 628,631 - SMa1151 0.58 +0.3 628,631 - SMa1151 0.58 +1.1 628,631 - SMa1151 0.58 +4.1 628,709 + SMa1151 0.75 +2.6 628,709 + SMa1151 0.75 -3.4 628,709 + SMa1151 0.75 +1.4 628,710 - SMa1151 0.75 +0.8 628,725 + SMa1151 0.79 -0.0 628,727 + SMa1151 0.79 +0.7 628,788 + -0.4 628,789 - -1.2 628,789 - +2.3 628,870 - -2.0 628,870 - -3.3 628,925 + -0.9 628,925 + -0.8 628,925 + -2.5 628,926 - -0.8 628,926 - -0.5 628,926 - +0.8 628,949 + +0.7 629,015 + +0.5 629,015 + -3.0 629,015 + +0.4 629,093 + SMa1153 0.19 +0.5 629,094 - SMa1153 0.19 -1.7 629,094 - SMa1153 0.19 +2.0 629,512 - SMa1153 0.81 +0.4 629,684 + +0.4 629,730 + +0.8 629,730 + -0.5 629,730 + -1.3 629,731 - -1.2 629,733 + -1.0 629,734 - -2.3 629,745 + +1.6 629,746 - -0.2 629,924 - SMa1154 0.48 -0.3 630,008 - SMa1154 0.69 -0.5 630,168 - -0.8 630,397 + -0.2 630,398 - +0.8 630,398 - -2.3 630,399 + +0.2 630,491 + SMa1155 0.11 +0.1 630,492 - SMa1155 0.11 -1.8 630,492 - SMa1155 0.11 -3.3 630,492 - SMa1155 0.11 +0.5
Or see this region's nucleotide sequence