Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0873 and SMa0874 are separated by 87 nucleotides SMa0874 and SMa0875 are separated by 6 nucleotides
SMa0873: SMa0873 - nitrogenase molybdenum-cofactor biosynthesis protein NifN, at 483,756 to 485,081
SMa0873
SMa0874: SMa0874 - NodN dehydratase, at 485,169 to 485,654
SMa0874
SMa0875: SMa0875 - NolG efflux transporter, at 485,661 to 488,858
SMa0875
Position (kb) 485
486 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 484.181 kb on + strand, within SMa0873 at 484.265 kb on + strand, within SMa0873 at 484.266 kb on - strand, within SMa0873 at 484.297 kb on + strand, within SMa0873 at 484.297 kb on + strand, within SMa0873 at 484.298 kb on - strand, within SMa0873 at 484.324 kb on + strand, within SMa0873 at 484.328 kb on - strand, within SMa0873 at 484.328 kb on - strand, within SMa0873 at 484.386 kb on - strand, within SMa0873 at 484.387 kb on + strand, within SMa0873 at 484.388 kb on - strand, within SMa0873 at 484.388 kb on - strand, within SMa0873 at 484.491 kb on - strand, within SMa0873 at 484.491 kb on - strand, within SMa0873 at 484.491 kb on - strand, within SMa0873 at 484.536 kb on + strand, within SMa0873 at 484.537 kb on - strand, within SMa0873 at 484.565 kb on - strand, within SMa0873 at 484.565 kb on - strand, within SMa0873 at 484.728 kb on + strand, within SMa0873 at 484.740 kb on - strand, within SMa0873 at 484.828 kb on + strand, within SMa0873 at 484.936 kb on + strand, within SMa0873 at 485.283 kb on + strand, within SMa0874 at 485.287 kb on - strand, within SMa0874 at 485.302 kb on - strand, within SMa0874 at 485.302 kb on - strand, within SMa0874 at 485.520 kb on + strand, within SMa0874 at 485.521 kb on - strand, within SMa0874 at 485.666 kb on + strand at 485.785 kb on - strand at 485.809 kb on + strand at 485.810 kb on - strand at 485.810 kb on - strand at 485.856 kb on + strand at 486.116 kb on + strand, within SMa0875 at 486.116 kb on + strand, within SMa0875 at 486.116 kb on + strand, within SMa0875 at 486.117 kb on - strand, within SMa0875 at 486.117 kb on - strand, within SMa0875 at 486.117 kb on - strand, within SMa0875 at 486.134 kb on + strand, within SMa0875 at 486.236 kb on - strand, within SMa0875 at 486.525 kb on - strand, within SMa0875 at 486.637 kb on - strand, within SMa0875 at 486.637 kb on - strand, within SMa0875
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 484,181 + SMa0873 0.32 -0.9 484,265 + SMa0873 0.38 -0.7 484,266 - SMa0873 0.38 -2.2 484,297 + SMa0873 0.41 +0.0 484,297 + SMa0873 0.41 +1.7 484,298 - SMa0873 0.41 -1.4 484,324 + SMa0873 0.43 -0.8 484,328 - SMa0873 0.43 -1.2 484,328 - SMa0873 0.43 -0.5 484,386 - SMa0873 0.48 +0.8 484,387 + SMa0873 0.48 -0.5 484,388 - SMa0873 0.48 +1.3 484,388 - SMa0873 0.48 +0.4 484,491 - SMa0873 0.55 -1.5 484,491 - SMa0873 0.55 -1.2 484,491 - SMa0873 0.55 -1.3 484,536 + SMa0873 0.59 +3.7 484,537 - SMa0873 0.59 +0.5 484,565 - SMa0873 0.61 -0.4 484,565 - SMa0873 0.61 -0.5 484,728 + SMa0873 0.73 +1.8 484,740 - SMa0873 0.74 -3.3 484,828 + SMa0873 0.81 +0.0 484,936 + SMa0873 0.89 +1.5 485,283 + SMa0874 0.23 +3.2 485,287 - SMa0874 0.24 -2.0 485,302 - SMa0874 0.27 -0.2 485,302 - SMa0874 0.27 +0.8 485,520 + SMa0874 0.72 +3.6 485,521 - SMa0874 0.72 +1.5 485,666 + -2.0 485,785 - +0.2 485,809 + +2.7 485,810 - -1.0 485,810 - -0.4 485,856 + +0.3 486,116 + SMa0875 0.14 +0.4 486,116 + SMa0875 0.14 +0.4 486,116 + SMa0875 0.14 -0.3 486,117 - SMa0875 0.14 -0.8 486,117 - SMa0875 0.14 +0.6 486,117 - SMa0875 0.14 +2.0 486,134 + SMa0875 0.15 -0.1 486,236 - SMa0875 0.18 -0.2 486,525 - SMa0875 0.27 -0.4 486,637 - SMa0875 0.31 +1.7 486,637 - SMa0875 0.31 -0.4
Or see this region's nucleotide sequence