Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0846 and SMa0848 are separated by 323 nucleotides SMa0848 and SMa0849 are separated by 57 nucleotides SMa0849 and SMa0850 are separated by 301 nucleotides SMa0850 and SMa0851 are separated by 133 nucleotides
SMa0846: SMa0846 - transposase, fragment, at 465,363 to 465,620
SMa0846
SMa0848: SMa0848 - hypothetical protein, at 465,944 to 466,360
SMa0848
SMa0849: SMa0849 - SyrM transcriptional regulator, at 466,418 to 467,398
SMa0849
SMa0850: SMa0850 - hypothetical protein, at 467,700 to 468,065
SMa0850
SMa0851: SMa0851 - NodH sulfotransferase, at 468,199 to 468,942
SMa0851
Position (kb) 466
467
468 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 465.514 kb on + strand, within SMa0846 at 465.618 kb on + strand at 465.926 kb on + strand at 465.927 kb on - strand at 465.927 kb on - strand at 465.927 kb on - strand at 466.007 kb on + strand, within SMa0848 at 466.009 kb on + strand, within SMa0848 at 466.179 kb on - strand, within SMa0848 at 466.179 kb on - strand, within SMa0848 at 466.279 kb on - strand, within SMa0848 at 466.411 kb on + strand at 466.411 kb on + strand at 466.411 kb on + strand at 466.447 kb on + strand at 466.519 kb on - strand, within SMa0849 at 466.525 kb on - strand, within SMa0849 at 466.525 kb on - strand, within SMa0849 at 466.564 kb on + strand, within SMa0849 at 466.667 kb on - strand, within SMa0849 at 466.723 kb on - strand, within SMa0849 at 466.909 kb on - strand, within SMa0849 at 467.176 kb on - strand, within SMa0849 at 467.223 kb on + strand, within SMa0849 at 467.303 kb on + strand at 467.434 kb on + strand at 467.434 kb on + strand at 467.435 kb on - strand at 467.464 kb on - strand at 467.648 kb on - strand at 467.655 kb on + strand at 467.733 kb on - strand at 467.754 kb on - strand, within SMa0850 at 467.813 kb on + strand, within SMa0850 at 467.814 kb on - strand, within SMa0850 at 467.814 kb on - strand, within SMa0850 at 467.814 kb on - strand, within SMa0850 at 467.879 kb on + strand, within SMa0850 at 467.879 kb on + strand, within SMa0850 at 467.947 kb on + strand, within SMa0850 at 468.044 kb on + strand at 468.133 kb on + strand at 468.230 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 465,514 + SMa0846 0.59 -0.3 465,618 + -1.3 465,926 + -3.6 465,927 - -0.2 465,927 - +3.1 465,927 - +0.3 466,007 + SMa0848 0.15 -1.8 466,009 + SMa0848 0.16 -1.9 466,179 - SMa0848 0.56 +0.9 466,179 - SMa0848 0.56 -2.5 466,279 - SMa0848 0.80 +0.7 466,411 + -0.1 466,411 + +0.0 466,411 + -1.6 466,447 + +0.1 466,519 - SMa0849 0.10 -0.4 466,525 - SMa0849 0.11 -0.9 466,525 - SMa0849 0.11 -0.1 466,564 + SMa0849 0.15 -0.2 466,667 - SMa0849 0.25 -0.0 466,723 - SMa0849 0.31 +2.0 466,909 - SMa0849 0.50 -2.4 467,176 - SMa0849 0.77 +1.1 467,223 + SMa0849 0.82 -3.1 467,303 + -0.7 467,434 + +1.6 467,434 + +0.8 467,435 - +0.3 467,464 - -1.6 467,648 - +0.8 467,655 + -0.3 467,733 - -3.3 467,754 - SMa0850 0.15 -0.5 467,813 + SMa0850 0.31 +1.0 467,814 - SMa0850 0.31 +0.0 467,814 - SMa0850 0.31 +0.4 467,814 - SMa0850 0.31 -0.9 467,879 + SMa0850 0.49 +0.4 467,879 + SMa0850 0.49 +2.4 467,947 + SMa0850 0.67 +0.8 468,044 + +2.6 468,133 + -0.0 468,230 + +1.1
Or see this region's nucleotide sequence