Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0800 and SMa0802 are separated by 1 nucleotides SMa0802 and SMa0803 overlap by 4 nucleotides SMa0803 and SMa0805 are separated by 81 nucleotides
SMa0800: SMa0800 - ABC transporter permease, at 436,964 to 437,839
SMa0800
SMa0802: SMa0802 - ABC transporter permease, at 437,841 to 438,641
SMa0802
SMa0803: SMa0803 - ABC transporter ATP-binding protein, at 438,638 to 439,717
SMa0803
SMa0805: SMa0805 - GabD4 succinate-semialdehyde dehdyrogenase, at 439,799 to 441,271
SMa0805
Position (kb) 438
439
440 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 437.678 kb on - strand, within SMa0800 at 437.789 kb on + strand at 437.932 kb on + strand, within SMa0802 at 437.933 kb on - strand, within SMa0802 at 437.933 kb on - strand, within SMa0802 at 437.938 kb on + strand, within SMa0802 at 437.945 kb on - strand, within SMa0802 at 438.006 kb on + strand, within SMa0802 at 438.016 kb on + strand, within SMa0802 at 438.016 kb on + strand, within SMa0802 at 438.017 kb on - strand, within SMa0802 at 438.077 kb on + strand, within SMa0802 at 438.200 kb on - strand at 438.213 kb on + strand, within SMa0802 at 438.213 kb on + strand, within SMa0802 at 438.214 kb on - strand, within SMa0802 at 438.643 kb on + strand at 438.644 kb on - strand at 438.680 kb on + strand at 438.710 kb on - strand at 438.782 kb on + strand, within SMa0803 at 438.782 kb on + strand, within SMa0803 at 438.782 kb on + strand, within SMa0803 at 438.828 kb on + strand, within SMa0803 at 438.828 kb on + strand, within SMa0803 at 438.829 kb on - strand, within SMa0803 at 438.829 kb on - strand, within SMa0803 at 438.872 kb on - strand, within SMa0803 at 439.031 kb on - strand, within SMa0803 at 439.092 kb on - strand, within SMa0803 at 439.092 kb on - strand, within SMa0803 at 439.208 kb on + strand, within SMa0803 at 439.208 kb on + strand, within SMa0803 at 439.305 kb on + strand, within SMa0803 at 439.305 kb on + strand, within SMa0803 at 439.308 kb on - strand, within SMa0803 at 439.382 kb on - strand, within SMa0803 at 439.481 kb on - strand, within SMa0803 at 439.481 kb on - strand, within SMa0803 at 439.481 kb on - strand, within SMa0803 at 439.487 kb on - strand, within SMa0803 at 439.487 kb on - strand, within SMa0803 at 439.728 kb on - strand at 439.728 kb on - strand at 439.794 kb on + strand at 439.794 kb on + strand at 439.795 kb on - strand at 439.795 kb on - strand at 440.063 kb on + strand, within SMa0805 at 440.063 kb on + strand, within SMa0805 at 440.064 kb on - strand, within SMa0805
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 437,678 - SMa0800 0.82 -1.1 437,789 + -3.8 437,932 + SMa0802 0.11 +0.8 437,933 - SMa0802 0.11 -0.2 437,933 - SMa0802 0.11 +1.0 437,938 + SMa0802 0.12 +0.7 437,945 - SMa0802 0.13 -1.3 438,006 + SMa0802 0.21 -1.4 438,016 + SMa0802 0.22 -0.8 438,016 + SMa0802 0.22 +0.5 438,017 - SMa0802 0.22 +1.1 438,077 + SMa0802 0.29 -0.9 438,200 - +0.8 438,213 + SMa0802 0.46 -0.5 438,213 + SMa0802 0.46 -1.8 438,214 - SMa0802 0.47 -1.4 438,643 + +0.5 438,644 - +0.9 438,680 + +0.8 438,710 - +0.9 438,782 + SMa0803 0.13 +0.8 438,782 + SMa0803 0.13 -0.9 438,782 + SMa0803 0.13 +2.4 438,828 + SMa0803 0.18 +1.4 438,828 + SMa0803 0.18 -0.1 438,829 - SMa0803 0.18 -2.0 438,829 - SMa0803 0.18 -0.7 438,872 - SMa0803 0.22 +0.7 439,031 - SMa0803 0.36 -0.9 439,092 - SMa0803 0.42 +0.8 439,092 - SMa0803 0.42 -0.0 439,208 + SMa0803 0.53 -2.5 439,208 + SMa0803 0.53 +0.9 439,305 + SMa0803 0.62 +2.3 439,305 + SMa0803 0.62 -0.4 439,308 - SMa0803 0.62 +0.7 439,382 - SMa0803 0.69 +3.2 439,481 - SMa0803 0.78 +1.1 439,481 - SMa0803 0.78 +0.9 439,481 - SMa0803 0.78 +0.8 439,487 - SMa0803 0.79 +1.2 439,487 - SMa0803 0.79 +1.5 439,728 - -0.5 439,728 - -0.1 439,794 + -0.1 439,794 + +1.0 439,795 - -1.8 439,795 - -0.1 440,063 + SMa0805 0.18 -0.3 440,063 + SMa0805 0.18 -0.3 440,064 - SMa0805 0.18 -2.1
Or see this region's nucleotide sequence