Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0710 and SMa0711 are separated by 11 nucleotides SMa0711 and SMa0713 are separated by 1 nucleotides SMa0713 and SMa0714 overlap by 4 nucleotides SMa0714 and SMa0715 are separated by 1 nucleotides
SMa0710: SMa0710 - ABC transporter permease, at 385,360 to 386,373
SMa0710
SMa0711: SMa0711 - ABC transporter permease, at 386,385 to 387,215
SMa0711
SMa0713: SMa0713 - ABC transporter ATP-binding protein, at 387,217 to 387,810
SMa0713
SMa0714: SMa0714 - ABC transporter ATP-binding protein, at 387,807 to 388,304
SMa0714
SMa0715: SMa0715 - Nucleoside-diphosphate-sugar epimerase, at 388,306 to 389,286
SMa0715
Position (kb) 387
388 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 386.251 kb on + strand, within SMa0710 at 386.251 kb on + strand, within SMa0710 at 386.306 kb on + strand at 386.352 kb on + strand at 386.352 kb on + strand at 386.368 kb on + strand at 386.368 kb on + strand at 386.368 kb on + strand at 386.368 kb on + strand at 386.368 kb on + strand at 386.369 kb on - strand at 386.369 kb on - strand at 386.372 kb on - strand at 386.372 kb on - strand at 386.372 kb on - strand at 386.372 kb on - strand at 386.459 kb on + strand at 386.459 kb on + strand at 386.463 kb on + strand at 386.463 kb on + strand at 386.463 kb on + strand at 386.464 kb on - strand at 386.464 kb on - strand at 386.588 kb on - strand, within SMa0711 at 386.626 kb on + strand, within SMa0711 at 386.627 kb on - strand, within SMa0711 at 386.661 kb on + strand, within SMa0711 at 386.662 kb on - strand, within SMa0711 at 386.969 kb on - strand, within SMa0711 at 386.969 kb on - strand, within SMa0711 at 386.985 kb on + strand, within SMa0711 at 386.985 kb on + strand, within SMa0711 at 387.012 kb on + strand, within SMa0711 at 387.012 kb on + strand, within SMa0711 at 387.013 kb on - strand, within SMa0711 at 387.013 kb on - strand, within SMa0711 at 387.019 kb on - strand, within SMa0711 at 387.019 kb on - strand, within SMa0711 at 387.019 kb on - strand at 387.159 kb on + strand at 387.159 kb on + strand at 387.160 kb on - strand at 387.160 kb on - strand at 387.177 kb on + strand at 387.245 kb on - strand at 387.314 kb on + strand, within SMa0713 at 387.466 kb on + strand, within SMa0713 at 387.466 kb on + strand, within SMa0713 at 387.466 kb on + strand, within SMa0713 at 387.466 kb on + strand, within SMa0713 at 387.467 kb on - strand, within SMa0713 at 387.467 kb on - strand, within SMa0713 at 387.467 kb on - strand, within SMa0713 at 387.467 kb on - strand, within SMa0713 at 387.467 kb on - strand, within SMa0713 at 387.467 kb on - strand, within SMa0713 at 387.501 kb on + strand, within SMa0713 at 387.657 kb on + strand, within SMa0713 at 387.728 kb on + strand, within SMa0713 at 387.781 kb on - strand at 387.872 kb on + strand, within SMa0714 at 387.873 kb on - strand, within SMa0714 at 387.873 kb on - strand, within SMa0714 at 388.120 kb on - strand, within SMa0714 at 388.150 kb on - strand, within SMa0714 at 388.472 kb on + strand, within SMa0715 at 388.472 kb on + strand, within SMa0715 at 388.781 kb on + strand, within SMa0715 at 388.782 kb on - strand, within SMa0715
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 386,251 + SMa0710 0.88 -0.5 386,251 + SMa0710 0.88 +0.3 386,306 + +0.4 386,352 + -1.4 386,352 + -0.9 386,368 + +2.4 386,368 + +1.5 386,368 + +0.8 386,368 + +0.9 386,368 + +0.8 386,369 - -0.0 386,369 - -2.0 386,372 - -0.1 386,372 - -0.7 386,372 - +0.8 386,372 - +1.6 386,459 + +1.0 386,459 + +1.7 386,463 + -0.2 386,463 + +1.2 386,463 + -3.7 386,464 - +0.1 386,464 - +1.0 386,588 - SMa0711 0.24 -0.4 386,626 + SMa0711 0.29 -1.0 386,627 - SMa0711 0.29 +0.6 386,661 + SMa0711 0.33 +1.3 386,662 - SMa0711 0.33 -1.7 386,969 - SMa0711 0.70 -0.3 386,969 - SMa0711 0.70 -0.3 386,985 + SMa0711 0.72 +0.9 386,985 + SMa0711 0.72 -0.8 387,012 + SMa0711 0.75 -2.1 387,012 + SMa0711 0.75 -0.2 387,013 - SMa0711 0.76 +1.4 387,013 - SMa0711 0.76 +0.2 387,019 - SMa0711 0.76 -0.7 387,019 - SMa0711 0.76 -0.7 387,019 - -0.2 387,159 + -1.8 387,159 + -0.0 387,160 - -0.7 387,160 - -0.1 387,177 + -0.8 387,245 - -0.5 387,314 + SMa0713 0.16 +0.8 387,466 + SMa0713 0.42 +0.2 387,466 + SMa0713 0.42 -0.1 387,466 + SMa0713 0.42 +1.5 387,466 + SMa0713 0.42 +0.1 387,467 - SMa0713 0.42 -2.1 387,467 - SMa0713 0.42 +0.1 387,467 - SMa0713 0.42 +2.1 387,467 - SMa0713 0.42 +1.7 387,467 - SMa0713 0.42 -0.0 387,467 - SMa0713 0.42 +0.8 387,501 + SMa0713 0.48 -3.2 387,657 + SMa0713 0.74 +0.2 387,728 + SMa0713 0.86 +0.1 387,781 - -3.7 387,872 + SMa0714 0.13 -0.9 387,873 - SMa0714 0.13 -0.4 387,873 - SMa0714 0.13 +0.5 388,120 - SMa0714 0.63 -1.1 388,150 - SMa0714 0.69 +0.7 388,472 + SMa0715 0.17 +0.2 388,472 + SMa0715 0.17 +3.3 388,781 + SMa0715 0.48 +0.4 388,782 - SMa0715 0.49 +1.8
Or see this region's nucleotide sequence