Strain Fitness in Sinorhizobium meliloti 1021 around SMa0697

Experiment: Polymyxin B sulfate 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0695 and SMa0697 are separated by 2 nucleotidesSMa0697 and SMa0699 are separated by 218 nucleotides SMa0695: SMa0695 - ornithine carbamoyltransferase, at 376,973 to 377,977 SMa0695 SMa0697: SMa0697 - carbamate kinase, at 377,980 to 378,954 SMa0697 SMa0699: SMa0699 - hypothetical protein, at 379,173 to 379,643 SMa0699 Position (kb) 377 378 379Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 377.018 kb on + strandat 377.019 kb on - strandat 377.040 kb on - strandat 377.046 kb on + strandat 377.149 kb on + strand, within SMa0695at 377.150 kb on - strand, within SMa0695at 377.198 kb on - strand, within SMa0695at 377.202 kb on - strand, within SMa0695at 377.351 kb on + strand, within SMa0695at 377.351 kb on + strand, within SMa0695at 377.352 kb on - strand, within SMa0695at 377.373 kb on - strand, within SMa0695at 377.373 kb on - strand, within SMa0695at 377.408 kb on - strand, within SMa0695at 377.408 kb on - strand, within SMa0695at 377.420 kb on - strand, within SMa0695at 377.448 kb on - strand, within SMa0695at 377.453 kb on + strand, within SMa0695at 377.454 kb on - strand, within SMa0695at 377.455 kb on + strand, within SMa0695at 377.455 kb on + strand, within SMa0695at 377.508 kb on + strand, within SMa0695at 377.529 kb on + strand, within SMa0695at 377.587 kb on + strand, within SMa0695at 377.587 kb on + strand, within SMa0695at 377.587 kb on + strand, within SMa0695at 377.725 kb on + strand, within SMa0695at 377.725 kb on + strand, within SMa0695at 377.812 kb on + strand, within SMa0695at 377.908 kb on - strandat 377.908 kb on - strandat 377.908 kb on - strandat 377.938 kb on + strandat 377.938 kb on + strandat 377.939 kb on - strandat 377.979 kb on + strandat 377.999 kb on + strandat 378.000 kb on - strandat 378.117 kb on + strand, within SMa0697at 378.146 kb on + strand, within SMa0697at 378.150 kb on - strand, within SMa0697at 378.169 kb on + strand, within SMa0697at 378.169 kb on + strand, within SMa0697at 378.169 kb on + strand, within SMa0697at 378.170 kb on - strand, within SMa0697at 378.198 kb on + strand, within SMa0697at 378.200 kb on + strand, within SMa0697at 378.200 kb on + strand, within SMa0697at 378.200 kb on + strand, within SMa0697at 378.200 kb on + strandat 378.426 kb on + strand, within SMa0697at 378.550 kb on + strand, within SMa0697at 378.550 kb on + strand, within SMa0697at 378.551 kb on - strand, within SMa0697at 378.653 kb on + strand, within SMa0697at 378.678 kb on - strand, within SMa0697at 378.766 kb on - strand, within SMa0697at 378.827 kb on + strand, within SMa0697at 378.827 kb on + strand, within SMa0697at 378.881 kb on + strandat 378.881 kb on + strandat 378.881 kb on + strandat 378.881 kb on + strandat 378.882 kb on - strandat 378.882 kb on - strandat 378.882 kb on - strandat 378.882 kb on - strandat 379.117 kb on + strandat 379.121 kb on + strandat 379.122 kb on - strandat 379.122 kb on - strandat 379.122 kb on - strandat 379.191 kb on - strandat 379.191 kb on - strandat 379.191 kb on - strandat 379.191 kb on - strandat 379.232 kb on + strand, within SMa0699at 379.233 kb on - strand, within SMa0699at 379.233 kb on - strand, within SMa0699at 379.291 kb on + strand, within SMa0699at 379.325 kb on - strand, within SMa0699at 379.325 kb on - strand, within SMa0699at 379.325 kb on - strand, within SMa0699at 379.419 kb on + strand, within SMa0699at 379.462 kb on + strand, within SMa0699at 379.568 kb on + strand, within SMa0699at 379.568 kb on + strand, within SMa0699at 379.569 kb on - strand, within SMa0699at 379.569 kb on - strand, within SMa0699at 379.569 kb on - strand, within SMa0699at 379.667 kb on + strandat 379.730 kb on + strandat 379.922 kb on + strandat 379.922 kb on + strandat 379.923 kb on - strandat 379.923 kb on - strandat 379.923 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml
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377,018 + -0.1
377,019 - -0.9
377,040 - -0.9
377,046 + -2.1
377,149 + SMa0695 0.18 +0.9
377,150 - SMa0695 0.18 -0.7
377,198 - SMa0695 0.22 -0.9
377,202 - SMa0695 0.23 +0.3
377,351 + SMa0695 0.38 -3.1
377,351 + SMa0695 0.38 -1.5
377,352 - SMa0695 0.38 -1.5
377,373 - SMa0695 0.40 +0.7
377,373 - SMa0695 0.40 +0.4
377,408 - SMa0695 0.43 -0.3
377,408 - SMa0695 0.43 -1.2
377,420 - SMa0695 0.44 -0.1
377,448 - SMa0695 0.47 -0.7
377,453 + SMa0695 0.48 -4.2
377,454 - SMa0695 0.48 -0.1
377,455 + SMa0695 0.48 +0.3
377,455 + SMa0695 0.48 -0.1
377,508 + SMa0695 0.53 -2.4
377,529 + SMa0695 0.55 -1.5
377,587 + SMa0695 0.61 -1.5
377,587 + SMa0695 0.61 -1.5
377,587 + SMa0695 0.61 +0.5
377,725 + SMa0695 0.75 +4.1
377,725 + SMa0695 0.75 -0.8
377,812 + SMa0695 0.83 -0.9
377,908 - -0.0
377,908 - +3.4
377,908 - +0.3
377,938 + +0.1
377,938 + +0.8
377,939 - -0.2
377,979 + -1.8
377,999 + +1.4
378,000 - -0.4
378,117 + SMa0697 0.14 -1.2
378,146 + SMa0697 0.17 -1.4
378,150 - SMa0697 0.17 -2.0
378,169 + SMa0697 0.19 -0.8
378,169 + SMa0697 0.19 +1.4
378,169 + SMa0697 0.19 -2.4
378,170 - SMa0697 0.19 +0.6
378,198 + SMa0697 0.22 -1.8
378,200 + SMa0697 0.23 -0.2
378,200 + SMa0697 0.23 +2.8
378,200 + SMa0697 0.23 -0.5
378,200 + +0.8
378,426 + SMa0697 0.46 -2.6
378,550 + SMa0697 0.58 -0.6
378,550 + SMa0697 0.58 +1.5
378,551 - SMa0697 0.59 +1.6
378,653 + SMa0697 0.69 +0.7
378,678 - SMa0697 0.72 +3.8
378,766 - SMa0697 0.81 +0.7
378,827 + SMa0697 0.87 +1.9
378,827 + SMa0697 0.87 -1.2
378,881 + +0.2
378,881 + +0.3
378,881 + +1.1
378,881 + +0.5
378,882 - +0.6
378,882 - +0.8
378,882 - +0.8
378,882 - +0.5
379,117 + +0.2
379,121 + -3.5
379,122 - +0.3
379,122 - +2.2
379,122 - +0.9
379,191 - -1.8
379,191 - +0.2
379,191 - -0.8
379,191 - +0.9
379,232 + SMa0699 0.13 -0.1
379,233 - SMa0699 0.13 -1.5
379,233 - SMa0699 0.13 -2.6
379,291 + SMa0699 0.25 -2.8
379,325 - SMa0699 0.32 -2.0
379,325 - SMa0699 0.32 -3.8
379,325 - SMa0699 0.32 +2.1
379,419 + SMa0699 0.52 +0.8
379,462 + SMa0699 0.61 +0.9
379,568 + SMa0699 0.84 -0.8
379,568 + SMa0699 0.84 +1.6
379,569 - SMa0699 0.84 +0.0
379,569 - SMa0699 0.84 +1.8
379,569 - SMa0699 0.84 +1.6
379,667 + +1.0
379,730 + +0.6
379,922 + +0.2
379,922 + -0.7
379,923 - -0.0
379,923 - +1.3
379,923 - +0.6

Or see this region's nucleotide sequence