Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0630 and SMa0631 overlap by 53 nucleotides SMa0631 and SMa0633 are separated by 178 nucleotides
SMa0630: SMa0630 - hypothetical protein, at 338,133 to 339,704
SMa0630
SMa0631: SMa0631 - hypothetical protein, at 339,652 to 340,218
SMa0631
SMa0633: SMa0633 - hypothetical protein, at 340,397 to 340,783
SMa0633
Position (kb) 339
340
341 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 338.660 kb on - strand, within SMa0630 at 338.692 kb on + strand, within SMa0630 at 338.949 kb on + strand, within SMa0630 at 339.076 kb on + strand, within SMa0630 at 339.261 kb on + strand, within SMa0630 at 339.261 kb on + strand, within SMa0630 at 339.261 kb on + strand, within SMa0630 at 339.262 kb on - strand, within SMa0630 at 339.262 kb on - strand, within SMa0630 at 339.298 kb on - strand, within SMa0630 at 339.308 kb on + strand, within SMa0630 at 339.309 kb on - strand, within SMa0630 at 339.309 kb on - strand, within SMa0630 at 339.309 kb on - strand, within SMa0630 at 339.309 kb on - strand, within SMa0630 at 339.488 kb on + strand, within SMa0630 at 339.489 kb on - strand at 339.654 kb on - strand at 339.660 kb on + strand at 339.844 kb on + strand, within SMa0631 at 339.922 kb on + strand, within SMa0631 at 339.943 kb on - strand, within SMa0631 at 339.985 kb on + strand, within SMa0631 at 339.985 kb on + strand, within SMa0631 at 339.985 kb on + strand, within SMa0631 at 339.986 kb on - strand, within SMa0631 at 339.986 kb on - strand, within SMa0631 at 340.039 kb on - strand, within SMa0631 at 340.207 kb on + strand at 340.207 kb on + strand at 340.208 kb on - strand at 340.331 kb on + strand at 340.737 kb on + strand, within SMa0633 at 340.737 kb on + strand, within SMa0633 at 340.738 kb on - strand, within SMa0633 at 340.913 kb on - strand at 340.959 kb on - strand at 341.053 kb on + strand at 341.053 kb on + strand at 341.054 kb on - strand at 341.054 kb on - strand at 341.054 kb on - strand at 341.058 kb on + strand at 341.059 kb on - strand at 341.078 kb on + strand at 341.079 kb on - strand at 341.192 kb on + strand at 341.194 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 338,660 - SMa0630 0.34 +2.2 338,692 + SMa0630 0.36 -4.2 338,949 + SMa0630 0.52 -1.6 339,076 + SMa0630 0.60 +0.6 339,261 + SMa0630 0.72 +0.1 339,261 + SMa0630 0.72 -0.8 339,261 + SMa0630 0.72 +0.4 339,262 - SMa0630 0.72 +4.2 339,262 - SMa0630 0.72 +0.8 339,298 - SMa0630 0.74 -0.2 339,308 + SMa0630 0.75 +0.3 339,309 - SMa0630 0.75 +0.3 339,309 - SMa0630 0.75 +0.5 339,309 - SMa0630 0.75 +0.4 339,309 - SMa0630 0.75 +2.0 339,488 + SMa0630 0.86 -0.9 339,489 - -0.8 339,654 - -1.0 339,660 + -3.8 339,844 + SMa0631 0.34 +1.1 339,922 + SMa0631 0.48 +0.3 339,943 - SMa0631 0.51 +0.6 339,985 + SMa0631 0.59 +2.1 339,985 + SMa0631 0.59 +0.6 339,985 + SMa0631 0.59 +0.3 339,986 - SMa0631 0.59 +0.4 339,986 - SMa0631 0.59 -2.0 340,039 - SMa0631 0.68 -0.8 340,207 + +0.3 340,207 + +0.2 340,208 - -0.3 340,331 + +0.1 340,737 + SMa0633 0.88 -1.5 340,737 + SMa0633 0.88 +0.8 340,738 - SMa0633 0.88 -0.2 340,913 - +0.8 340,959 - -1.6 341,053 + -0.5 341,053 + -2.0 341,054 - +1.8 341,054 - -1.0 341,054 - +0.8 341,058 + -1.1 341,059 - +0.0 341,078 + +0.6 341,079 - -0.1 341,192 + +0.8 341,194 + +1.0
Or see this region's nucleotide sequence