Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0070 and SMa0072 overlap by 4 nucleotides SMa0072 and SMa0074 are separated by 7 nucleotides SMa0074 and SMa0077 overlap by 1 nucleotides
SMa0070: SMa0070 - ABC transporter permease, at 37,353 to 38,336
SMa0070
SMa0072: SMa0072 - ABC transporter ATP-binding protein, at 38,333 to 39,064
SMa0072
SMa0074: SMa0074 - 3-ketoacyl-ACP reductase, at 39,072 to 39,830
SMa0074
SMa0077: SMa0077 - hypothetical protein, at 39,830 to 40,717
SMa0077
Position (kb) 38
39
40 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 37.686 kb on + strand, within SMa0070 at 37.686 kb on + strand, within SMa0070 at 37.686 kb on + strand, within SMa0070 at 37.686 kb on + strand, within SMa0070 at 37.827 kb on + strand, within SMa0070 at 37.827 kb on + strand, within SMa0070 at 37.827 kb on + strand, within SMa0070 at 37.828 kb on - strand, within SMa0070 at 37.828 kb on - strand, within SMa0070 at 37.828 kb on - strand, within SMa0070 at 38.377 kb on + strand at 38.377 kb on + strand at 38.377 kb on + strand at 38.378 kb on - strand at 38.378 kb on - strand at 38.378 kb on - strand at 38.378 kb on - strand at 38.538 kb on + strand, within SMa0072 at 38.538 kb on + strand, within SMa0072 at 38.588 kb on + strand, within SMa0072 at 38.588 kb on + strand, within SMa0072 at 38.589 kb on - strand, within SMa0072 at 38.589 kb on - strand, within SMa0072 at 38.589 kb on - strand, within SMa0072 at 38.594 kb on + strand, within SMa0072 at 38.595 kb on - strand, within SMa0072 at 39.255 kb on + strand, within SMa0074 at 39.255 kb on + strand, within SMa0074 at 39.256 kb on - strand, within SMa0074 at 39.276 kb on - strand, within SMa0074 at 39.280 kb on + strand, within SMa0074 at 39.281 kb on - strand, within SMa0074 at 39.281 kb on - strand, within SMa0074 at 39.305 kb on + strand, within SMa0074 at 39.400 kb on - strand, within SMa0074 at 39.534 kb on + strand, within SMa0074 at 39.534 kb on + strand, within SMa0074 at 39.534 kb on + strand, within SMa0074 at 39.535 kb on - strand, within SMa0074 at 39.535 kb on - strand, within SMa0074 at 39.543 kb on + strand, within SMa0074 at 39.543 kb on + strand, within SMa0074 at 39.543 kb on + strand, within SMa0074 at 39.544 kb on - strand, within SMa0074 at 39.544 kb on - strand, within SMa0074 at 39.547 kb on + strand, within SMa0074 at 39.547 kb on + strand, within SMa0074 at 39.548 kb on - strand, within SMa0074 at 39.548 kb on - strand, within SMa0074 at 39.690 kb on + strand, within SMa0074 at 39.690 kb on + strand, within SMa0074 at 39.691 kb on - strand, within SMa0074 at 39.691 kb on - strand, within SMa0074 at 39.691 kb on - strand, within SMa0074 at 39.691 kb on - strand, within SMa0074
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 37,686 + SMa0070 0.34 -0.8 37,686 + SMa0070 0.34 -1.2 37,686 + SMa0070 0.34 +0.5 37,686 + SMa0070 0.34 -0.4 37,827 + SMa0070 0.48 -2.1 37,827 + SMa0070 0.48 +0.1 37,827 + SMa0070 0.48 +0.2 37,828 - SMa0070 0.48 +1.1 37,828 - SMa0070 0.48 +0.6 37,828 - SMa0070 0.48 -2.1 38,377 + +0.5 38,377 + -0.7 38,377 + -0.7 38,378 - -3.3 38,378 - -0.4 38,378 - -3.0 38,378 - -0.3 38,538 + SMa0072 0.28 -0.7 38,538 + SMa0072 0.28 +0.1 38,588 + SMa0072 0.35 -0.4 38,588 + SMa0072 0.35 -2.5 38,589 - SMa0072 0.35 +1.3 38,589 - SMa0072 0.35 -0.9 38,589 - SMa0072 0.35 -1.2 38,594 + SMa0072 0.36 +0.9 38,595 - SMa0072 0.36 -2.3 39,255 + SMa0074 0.24 +0.2 39,255 + SMa0074 0.24 +1.9 39,256 - SMa0074 0.24 -1.1 39,276 - SMa0074 0.27 +0.1 39,280 + SMa0074 0.27 +1.0 39,281 - SMa0074 0.28 -1.7 39,281 - SMa0074 0.28 +0.0 39,305 + SMa0074 0.31 +0.4 39,400 - SMa0074 0.43 +1.3 39,534 + SMa0074 0.61 +0.7 39,534 + SMa0074 0.61 -1.7 39,534 + SMa0074 0.61 +2.8 39,535 - SMa0074 0.61 +1.5 39,535 - SMa0074 0.61 -3.7 39,543 + SMa0074 0.62 -2.0 39,543 + SMa0074 0.62 -0.7 39,543 + SMa0074 0.62 -2.0 39,544 - SMa0074 0.62 +1.2 39,544 - SMa0074 0.62 -0.6 39,547 + SMa0074 0.63 +0.6 39,547 + SMa0074 0.63 +2.7 39,548 - SMa0074 0.63 -1.2 39,548 - SMa0074 0.63 -0.9 39,690 + SMa0074 0.81 -0.9 39,690 + SMa0074 0.81 -0.7 39,691 - SMa0074 0.82 -0.5 39,691 - SMa0074 0.82 +0.9 39,691 - SMa0074 0.82 -0.5 39,691 - SMa0074 0.82 -1.2
Or see this region's nucleotide sequence