Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21281 and SM_b22012 are separated by 272 nucleotides SM_b22012 and SM_b21283 are separated by 93 nucleotides
SM_b21281: SM_b21281 - xanthine uracil permease, at 855,725 to 857,098
_b21281
SM_b22012: SM_b22012 - hypothetical protein, at 857,371 to 857,778
_b22012
SM_b21283: SM_b21283 - allantoicase, at 857,872 to 858,894
_b21283
Position (kb) 857
858 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 856.709 kb on + strand, within SM_b21281 at 856.709 kb on + strand, within SM_b21281 at 856.710 kb on - strand, within SM_b21281 at 856.829 kb on + strand, within SM_b21281 at 856.853 kb on + strand at 856.853 kb on + strand, within SM_b21281 at 856.853 kb on + strand, within SM_b21281 at 856.854 kb on - strand, within SM_b21281 at 856.989 kb on + strand at 856.989 kb on + strand at 856.994 kb on + strand at 856.995 kb on - strand at 856.995 kb on - strand at 856.995 kb on - strand at 857.201 kb on + strand at 857.201 kb on + strand at 857.202 kb on - strand at 857.202 kb on - strand at 857.202 kb on - strand at 857.202 kb on - strand at 857.268 kb on - strand at 857.596 kb on + strand, within SM_b22012 at 857.658 kb on - strand, within SM_b22012 at 857.674 kb on + strand, within SM_b22012 at 857.675 kb on - strand, within SM_b22012 at 857.675 kb on - strand, within SM_b22012 at 857.675 kb on - strand, within SM_b22012 at 857.676 kb on + strand, within SM_b22012 at 857.676 kb on + strand, within SM_b22012 at 857.676 kb on + strand, within SM_b22012 at 857.676 kb on + strand, within SM_b22012 at 857.677 kb on - strand, within SM_b22012 at 857.677 kb on - strand, within SM_b22012 at 857.677 kb on - strand, within SM_b22012 at 857.677 kb on - strand, within SM_b22012 at 857.733 kb on + strand, within SM_b22012 at 857.733 kb on + strand, within SM_b22012 at 857.733 kb on + strand, within SM_b22012 at 857.825 kb on - strand at 857.825 kb on - strand at 857.829 kb on + strand at 857.993 kb on + strand, within SM_b21283 at 857.994 kb on - strand, within SM_b21283 at 858.255 kb on + strand, within SM_b21283 at 858.297 kb on - strand, within SM_b21283 at 858.456 kb on - strand, within SM_b21283 at 858.456 kb on - strand, within SM_b21283 at 858.594 kb on - strand, within SM_b21283 at 858.669 kb on - strand, within SM_b21283 at 858.770 kb on - strand, within SM_b21283 at 858.774 kb on + strand, within SM_b21283 at 858.774 kb on + strand, within SM_b21283 at 858.775 kb on - strand, within SM_b21283 at 858.775 kb on - strand, within SM_b21283
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 856,709 + SM_b21281 0.72 -0.9 856,709 + SM_b21281 0.72 -0.4 856,710 - SM_b21281 0.72 -0.2 856,829 + SM_b21281 0.80 -2.2 856,853 + +2.8 856,853 + SM_b21281 0.82 +1.1 856,853 + SM_b21281 0.82 +0.6 856,854 - SM_b21281 0.82 -0.8 856,989 + -0.2 856,989 + -2.5 856,994 + +0.7 856,995 - -1.0 856,995 - +0.8 856,995 - -0.1 857,201 + +4.7 857,201 + -3.4 857,202 - +2.8 857,202 - +1.1 857,202 - -0.3 857,202 - -2.4 857,268 - -0.0 857,596 + SM_b22012 0.55 +2.3 857,658 - SM_b22012 0.70 +0.5 857,674 + SM_b22012 0.74 -0.1 857,675 - SM_b22012 0.75 +1.6 857,675 - SM_b22012 0.75 +0.8 857,675 - SM_b22012 0.75 +0.8 857,676 + SM_b22012 0.75 +0.3 857,676 + SM_b22012 0.75 +0.6 857,676 + SM_b22012 0.75 -2.7 857,676 + SM_b22012 0.75 -0.2 857,677 - SM_b22012 0.75 -0.3 857,677 - SM_b22012 0.75 +1.0 857,677 - SM_b22012 0.75 -2.6 857,677 - SM_b22012 0.75 +0.7 857,733 + SM_b22012 0.89 +0.3 857,733 + SM_b22012 0.89 +1.0 857,733 + SM_b22012 0.89 +0.9 857,825 - -1.3 857,825 - -0.8 857,829 + -1.2 857,993 + SM_b21283 0.12 +0.9 857,994 - SM_b21283 0.12 -0.2 858,255 + SM_b21283 0.37 +1.2 858,297 - SM_b21283 0.42 -0.9 858,456 - SM_b21283 0.57 +0.3 858,456 - SM_b21283 0.57 -0.6 858,594 - SM_b21283 0.71 +2.7 858,669 - SM_b21283 0.78 +0.4 858,770 - SM_b21283 0.88 -1.1 858,774 + SM_b21283 0.88 +4.9 858,774 + SM_b21283 0.88 -2.2 858,775 - SM_b21283 0.88 -0.8 858,775 - SM_b21283 0.88 +3.2
Or see this region's nucleotide sequence