Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21645

Experiment: Polymyxin B sulfate 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21644 and SM_b21645 are separated by 11 nucleotidesSM_b21645 and SM_b21646 overlap by 4 nucleotides SM_b21644: SM_b21644 - ABC transporter for D-Raffinose, ATPase component (from data), at 1,672,419 to 1,674,089 _b21644 SM_b21645: SM_b21645 - ABC transporter for D-Raffinose, permease component 1 (from data), at 1,674,101 to 1,675,228 _b21645 SM_b21646: SM_b21646 - ABC transporter for D-Raffinose, permease component 2 (from data), at 1,675,225 to 1,676,238 _b21646 Position (kb) 1674 1675 1676Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1673.174 kb on + strand, within SM_b21644at 1673.273 kb on + strand, within SM_b21644at 1673.274 kb on - strand, within SM_b21644at 1673.347 kb on + strand, within SM_b21644at 1673.348 kb on - strand, within SM_b21644at 1673.348 kb on - strand, within SM_b21644at 1673.572 kb on + strand, within SM_b21644at 1673.704 kb on + strand, within SM_b21644at 1673.812 kb on + strand, within SM_b21644at 1673.812 kb on + strand, within SM_b21644at 1673.813 kb on - strand, within SM_b21644at 1673.841 kb on - strand, within SM_b21644at 1673.932 kb on + strandat 1673.991 kb on + strandat 1674.198 kb on + strandat 1674.199 kb on - strandat 1674.217 kb on - strand, within SM_b21645at 1674.377 kb on + strand, within SM_b21645at 1674.424 kb on - strand, within SM_b21645at 1674.424 kb on - strand, within SM_b21645at 1674.791 kb on - strand, within SM_b21645at 1674.846 kb on + strand, within SM_b21645at 1674.847 kb on - strand, within SM_b21645at 1674.891 kb on + strand, within SM_b21645at 1674.954 kb on + strand, within SM_b21645at 1674.955 kb on - strand, within SM_b21645at 1675.158 kb on + strandat 1675.159 kb on - strandat 1675.232 kb on + strandat 1675.232 kb on + strandat 1675.232 kb on + strandat 1675.233 kb on - strandat 1675.234 kb on + strandat 1675.235 kb on - strandat 1675.346 kb on + strand, within SM_b21646at 1675.346 kb on + strand, within SM_b21646at 1675.346 kb on + strand, within SM_b21646at 1675.346 kb on + strand, within SM_b21646at 1675.439 kb on + strand, within SM_b21646at 1675.440 kb on - strand, within SM_b21646at 1675.460 kb on + strand, within SM_b21646at 1675.460 kb on + strand, within SM_b21646at 1675.460 kb on + strand, within SM_b21646at 1675.461 kb on - strand, within SM_b21646at 1675.461 kb on - strand, within SM_b21646at 1675.461 kb on - strand, within SM_b21646at 1675.461 kb on - strand, within SM_b21646at 1675.550 kb on + strand, within SM_b21646at 1675.596 kb on + strand, within SM_b21646at 1675.597 kb on - strand, within SM_b21646at 1675.597 kb on - strand, within SM_b21646at 1675.597 kb on - strand, within SM_b21646at 1675.601 kb on + strand, within SM_b21646at 1675.750 kb on - strand, within SM_b21646at 1675.750 kb on - strand, within SM_b21646at 1675.752 kb on - strand, within SM_b21646at 1675.752 kb on - strand, within SM_b21646at 1675.752 kb on - strand, within SM_b21646at 1675.752 kb on - strand, within SM_b21646at 1675.804 kb on + strand, within SM_b21646at 1675.835 kb on + strand, within SM_b21646at 1675.897 kb on + strand, within SM_b21646at 1675.898 kb on - strand, within SM_b21646at 1675.962 kb on - strand, within SM_b21646at 1675.964 kb on + strand, within SM_b21646at 1676.037 kb on + strand, within SM_b21646at 1676.060 kb on + strand, within SM_b21646at 1676.061 kb on - strand, within SM_b21646at 1676.138 kb on + strandat 1676.138 kb on + strandat 1676.139 kb on - strandat 1676.213 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml
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1,673,174 + SM_b21644 0.45 +1.2
1,673,273 + SM_b21644 0.51 +1.7
1,673,274 - SM_b21644 0.51 -0.7
1,673,347 + SM_b21644 0.56 -0.7
1,673,348 - SM_b21644 0.56 +0.0
1,673,348 - SM_b21644 0.56 -1.9
1,673,572 + SM_b21644 0.69 -0.6
1,673,704 + SM_b21644 0.77 -0.7
1,673,812 + SM_b21644 0.83 -0.3
1,673,812 + SM_b21644 0.83 +0.1
1,673,813 - SM_b21644 0.83 +0.3
1,673,841 - SM_b21644 0.85 +0.5
1,673,932 + +2.4
1,673,991 + -2.3
1,674,198 + +0.9
1,674,199 - +0.7
1,674,217 - SM_b21645 0.10 +0.8
1,674,377 + SM_b21645 0.24 -0.2
1,674,424 - SM_b21645 0.29 +0.3
1,674,424 - SM_b21645 0.29 -0.4
1,674,791 - SM_b21645 0.61 -1.1
1,674,846 + SM_b21645 0.66 +0.9
1,674,847 - SM_b21645 0.66 +0.1
1,674,891 + SM_b21645 0.70 +0.9
1,674,954 + SM_b21645 0.76 +2.3
1,674,955 - SM_b21645 0.76 +0.7
1,675,158 + -2.3
1,675,159 - +1.2
1,675,232 + -0.8
1,675,232 + +0.2
1,675,232 + -1.7
1,675,233 - -2.3
1,675,234 + -2.2
1,675,235 - -0.9
1,675,346 + SM_b21646 0.12 -1.0
1,675,346 + SM_b21646 0.12 -2.7
1,675,346 + SM_b21646 0.12 +1.9
1,675,346 + SM_b21646 0.12 -0.7
1,675,439 + SM_b21646 0.21 -0.8
1,675,440 - SM_b21646 0.21 +2.3
1,675,460 + SM_b21646 0.23 +0.1
1,675,460 + SM_b21646 0.23 -1.0
1,675,460 + SM_b21646 0.23 -1.7
1,675,461 - SM_b21646 0.23 -0.3
1,675,461 - SM_b21646 0.23 -3.5
1,675,461 - SM_b21646 0.23 +0.5
1,675,461 - SM_b21646 0.23 +0.9
1,675,550 + SM_b21646 0.32 -0.7
1,675,596 + SM_b21646 0.37 +1.5
1,675,597 - SM_b21646 0.37 -0.8
1,675,597 - SM_b21646 0.37 -0.7
1,675,597 - SM_b21646 0.37 +0.4
1,675,601 + SM_b21646 0.37 -3.2
1,675,750 - SM_b21646 0.52 +0.1
1,675,750 - SM_b21646 0.52 -0.4
1,675,752 - SM_b21646 0.52 -1.5
1,675,752 - SM_b21646 0.52 -1.3
1,675,752 - SM_b21646 0.52 -0.5
1,675,752 - SM_b21646 0.52 +0.8
1,675,804 + SM_b21646 0.57 +0.7
1,675,835 + SM_b21646 0.60 +0.9
1,675,897 + SM_b21646 0.66 +0.4
1,675,898 - SM_b21646 0.66 +0.4
1,675,962 - SM_b21646 0.73 -0.5
1,675,964 + SM_b21646 0.73 -0.2
1,676,037 + SM_b21646 0.80 +1.1
1,676,060 + SM_b21646 0.82 +0.7
1,676,061 - SM_b21646 0.82 +1.2
1,676,138 + -0.8
1,676,138 + +0.5
1,676,139 - -0.8
1,676,213 - -0.2

Or see this region's nucleotide sequence