Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21572 and SM_b21573 are separated by 96 nucleotides SM_b21573 and SM_b21574 are separated by 419 nucleotides
SM_b21572: SM_b21572 - amino acid uptake ABC transporter substrate-binding protein precursor, at 1,110,929 to 1,111,930
_b21572
SM_b21573: SM_b21573 - hypothetical protein, at 1,112,027 to 1,113,010
_b21573
SM_b21574: SM_b21574 - sensor histidine kinase domain-containing protein, at 1,113,430 to 1,113,813
_b21574
Position (kb)
1112
1113
1114 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1111.231 kb on + strand, within SM_b21572 at 1111.232 kb on - strand, within SM_b21572 at 1111.232 kb on - strand, within SM_b21572 at 1111.232 kb on - strand, within SM_b21572 at 1111.232 kb on - strand, within SM_b21572 at 1111.232 kb on - strand, within SM_b21572 at 1111.441 kb on + strand, within SM_b21572 at 1111.526 kb on + strand, within SM_b21572 at 1111.526 kb on + strand, within SM_b21572 at 1111.527 kb on - strand, within SM_b21572 at 1111.527 kb on - strand, within SM_b21572 at 1111.549 kb on + strand, within SM_b21572 at 1111.549 kb on + strand, within SM_b21572 at 1111.549 kb on + strand, within SM_b21572 at 1111.549 kb on + strand, within SM_b21572 at 1111.550 kb on - strand, within SM_b21572 at 1111.550 kb on - strand, within SM_b21572 at 1111.550 kb on - strand, within SM_b21572 at 1111.553 kb on + strand, within SM_b21572 at 1111.553 kb on + strand, within SM_b21572 at 1111.554 kb on - strand, within SM_b21572 at 1111.554 kb on - strand, within SM_b21572 at 1111.556 kb on + strand, within SM_b21572 at 1111.557 kb on - strand, within SM_b21572 at 1111.567 kb on + strand, within SM_b21572 at 1111.586 kb on + strand, within SM_b21572 at 1111.587 kb on - strand, within SM_b21572 at 1111.758 kb on - strand, within SM_b21572 at 1111.758 kb on - strand, within SM_b21572 at 1112.249 kb on + strand, within SM_b21573 at 1112.250 kb on - strand, within SM_b21573 at 1112.252 kb on + strand, within SM_b21573 at 1112.253 kb on - strand, within SM_b21573 at 1112.253 kb on - strand, within SM_b21573 at 1112.375 kb on + strand, within SM_b21573 at 1112.375 kb on + strand, within SM_b21573 at 1112.375 kb on + strand, within SM_b21573 at 1112.376 kb on - strand, within SM_b21573 at 1112.376 kb on - strand, within SM_b21573 at 1112.464 kb on + strand, within SM_b21573 at 1112.464 kb on + strand, within SM_b21573 at 1112.464 kb on + strand, within SM_b21573 at 1112.465 kb on - strand, within SM_b21573 at 1112.465 kb on - strand, within SM_b21573 at 1112.465 kb on - strand, within SM_b21573 at 1112.610 kb on + strand, within SM_b21573 at 1112.610 kb on + strand, within SM_b21573 at 1112.610 kb on + strand, within SM_b21573 at 1112.611 kb on - strand, within SM_b21573 at 1112.611 kb on - strand at 1112.675 kb on + strand, within SM_b21573 at 1112.762 kb on + strand, within SM_b21573 at 1112.763 kb on - strand, within SM_b21573 at 1112.873 kb on + strand, within SM_b21573 at 1112.873 kb on + strand, within SM_b21573 at 1112.873 kb on + strand, within SM_b21573 at 1112.873 kb on + strand, within SM_b21573 at 1112.874 kb on - strand, within SM_b21573 at 1112.874 kb on - strand, within SM_b21573 at 1112.912 kb on - strand at 1113.106 kb on - strand at 1113.112 kb on + strand at 1113.152 kb on - strand at 1113.204 kb on - strand at 1113.206 kb on + strand at 1113.207 kb on - strand at 1113.215 kb on + strand at 1113.216 kb on - strand at 1113.268 kb on + strand at 1113.378 kb on - strand at 1113.476 kb on + strand, within SM_b21574 at 1113.476 kb on + strand, within SM_b21574 at 1113.644 kb on - strand, within SM_b21574 at 1113.644 kb on - strand, within SM_b21574 at 1113.751 kb on - strand, within SM_b21574 at 1113.761 kb on + strand, within SM_b21574 at 1113.761 kb on + strand, within SM_b21574 at 1113.762 kb on - strand, within SM_b21574 at 1113.762 kb on - strand, within SM_b21574 at 1113.835 kb on - strand at 1113.857 kb on - strand at 1113.924 kb on - strand at 1113.924 kb on - strand at 1113.924 kb on - strand at 1113.959 kb on + strand at 1113.959 kb on + strand at 1113.960 kb on - strand at 1113.960 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 1,111,231 + SM_b21572 0.30 +2.4 1,111,232 - SM_b21572 0.30 -0.9 1,111,232 - SM_b21572 0.30 +1.0 1,111,232 - SM_b21572 0.30 -0.2 1,111,232 - SM_b21572 0.30 -0.3 1,111,232 - SM_b21572 0.30 +4.4 1,111,441 + SM_b21572 0.51 +0.1 1,111,526 + SM_b21572 0.60 +0.9 1,111,526 + SM_b21572 0.60 +0.6 1,111,527 - SM_b21572 0.60 +0.9 1,111,527 - SM_b21572 0.60 +0.2 1,111,549 + SM_b21572 0.62 -2.1 1,111,549 + SM_b21572 0.62 -2.5 1,111,549 + SM_b21572 0.62 -1.0 1,111,549 + SM_b21572 0.62 +0.1 1,111,550 - SM_b21572 0.62 +0.2 1,111,550 - SM_b21572 0.62 -0.2 1,111,550 - SM_b21572 0.62 +0.1 1,111,553 + SM_b21572 0.62 -0.9 1,111,553 + SM_b21572 0.62 +0.5 1,111,554 - SM_b21572 0.62 +0.4 1,111,554 - SM_b21572 0.62 +0.2 1,111,556 + SM_b21572 0.63 -3.6 1,111,557 - SM_b21572 0.63 +1.7 1,111,567 + SM_b21572 0.64 +0.9 1,111,586 + SM_b21572 0.66 -0.1 1,111,587 - SM_b21572 0.66 -1.3 1,111,758 - SM_b21572 0.83 +2.4 1,111,758 - SM_b21572 0.83 +0.4 1,112,249 + SM_b21573 0.23 -0.2 1,112,250 - SM_b21573 0.23 -2.8 1,112,252 + SM_b21573 0.23 +0.2 1,112,253 - SM_b21573 0.23 +0.2 1,112,253 - SM_b21573 0.23 +0.9 1,112,375 + SM_b21573 0.35 -1.1 1,112,375 + SM_b21573 0.35 +0.6 1,112,375 + SM_b21573 0.35 -2.8 1,112,376 - SM_b21573 0.35 -0.6 1,112,376 - SM_b21573 0.35 -1.0 1,112,464 + SM_b21573 0.44 -0.4 1,112,464 + SM_b21573 0.44 -2.1 1,112,464 + SM_b21573 0.44 -0.4 1,112,465 - SM_b21573 0.45 +1.1 1,112,465 - SM_b21573 0.45 +0.0 1,112,465 - SM_b21573 0.45 +0.0 1,112,610 + SM_b21573 0.59 -0.7 1,112,610 + SM_b21573 0.59 -1.0 1,112,610 + SM_b21573 0.59 -0.3 1,112,611 - SM_b21573 0.59 -0.8 1,112,611 - -1.6 1,112,675 + SM_b21573 0.66 +1.0 1,112,762 + SM_b21573 0.75 -0.6 1,112,763 - SM_b21573 0.75 +0.5 1,112,873 + SM_b21573 0.86 +0.6 1,112,873 + SM_b21573 0.86 -3.4 1,112,873 + SM_b21573 0.86 -1.6 1,112,873 + SM_b21573 0.86 +0.0 1,112,874 - SM_b21573 0.86 -0.4 1,112,874 - SM_b21573 0.86 -0.0 1,112,912 - -3.2 1,113,106 - +0.9 1,113,112 + +1.3 1,113,152 - -0.6 1,113,204 - -0.0 1,113,206 + -3.0 1,113,207 - +0.6 1,113,215 + -1.1 1,113,216 - +0.6 1,113,268 + +0.9 1,113,378 - -0.6 1,113,476 + SM_b21574 0.12 +0.8 1,113,476 + SM_b21574 0.12 +0.8 1,113,644 - SM_b21574 0.56 -0.2 1,113,644 - SM_b21574 0.56 -1.9 1,113,751 - SM_b21574 0.84 -0.0 1,113,761 + SM_b21574 0.86 +0.8 1,113,761 + SM_b21574 0.86 +1.5 1,113,762 - SM_b21574 0.86 +0.3 1,113,762 - SM_b21574 0.86 -3.2 1,113,835 - +0.6 1,113,857 - +0.7 1,113,924 - -0.4 1,113,924 - +2.4 1,113,924 - +0.9 1,113,959 + -0.5 1,113,959 + -1.2 1,113,960 - +1.8 1,113,960 - +0.3
Or see this region's nucleotide sequence