Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21504

Experiment: Polymyxin B sulfate 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21503 and SM_b21504 are separated by 10 nucleotidesSM_b21504 and SM_b21505 overlap by 8 nucleotides SM_b21503: SM_b21503 - glycosyltransferase, at 1,427,874 to 1,429,217 _b21503 SM_b21504: SM_b21504 - hypothetical protein, at 1,429,228 to 1,429,983 _b21504 SM_b21505: SM_b21505 - membrane protein, Wzy-like polysaccharide polymerase ExoQ, at 1,429,976 to 1,431,307 _b21505 Position (kb) 1429 1430Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1428.278 kb on - strand, within SM_b21503at 1428.511 kb on + strand, within SM_b21503at 1428.616 kb on + strand, within SM_b21503at 1428.752 kb on - strand, within SM_b21503at 1428.781 kb on - strand, within SM_b21503at 1428.901 kb on + strand, within SM_b21503at 1428.901 kb on + strand, within SM_b21503at 1429.034 kb on - strand, within SM_b21503at 1429.034 kb on - strand, within SM_b21503at 1429.139 kb on + strandat 1429.139 kb on + strandat 1429.139 kb on + strandat 1429.140 kb on - strandat 1429.183 kb on + strandat 1429.183 kb on + strandat 1429.183 kb on + strandat 1429.184 kb on - strandat 1429.229 kb on + strandat 1429.292 kb on + strandat 1429.293 kb on - strandat 1429.331 kb on + strand, within SM_b21504at 1429.332 kb on - strand, within SM_b21504at 1429.332 kb on - strand, within SM_b21504at 1429.566 kb on - strand, within SM_b21504at 1429.784 kb on - strand, within SM_b21504at 1429.784 kb on - strand, within SM_b21504at 1429.784 kb on - strand, within SM_b21504at 1429.785 kb on + strand, within SM_b21504at 1429.787 kb on + strand, within SM_b21504at 1429.787 kb on + strand, within SM_b21504at 1429.787 kb on + strand, within SM_b21504at 1429.787 kb on + strand, within SM_b21504at 1429.787 kb on + strand, within SM_b21504at 1429.788 kb on - strand, within SM_b21504at 1429.788 kb on - strand, within SM_b21504at 1429.788 kb on - strand, within SM_b21504at 1429.788 kb on - strand, within SM_b21504at 1429.788 kb on - strand, within SM_b21504at 1429.788 kb on - strand, within SM_b21504at 1429.808 kb on + strand, within SM_b21504at 1429.808 kb on + strand, within SM_b21504at 1429.809 kb on - strand, within SM_b21504at 1429.809 kb on - strand, within SM_b21504at 1429.809 kb on - strand, within SM_b21504at 1429.988 kb on + strandat 1430.055 kb on + strandat 1430.056 kb on - strandat 1430.056 kb on - strandat 1430.137 kb on - strand, within SM_b21505at 1430.145 kb on - strand, within SM_b21505at 1430.150 kb on + strand, within SM_b21505at 1430.151 kb on - strand, within SM_b21505at 1430.341 kb on - strand, within SM_b21505at 1430.380 kb on - strand, within SM_b21505at 1430.380 kb on - strand, within SM_b21505at 1430.706 kb on + strand, within SM_b21505at 1430.707 kb on - strand, within SM_b21505at 1430.707 kb on - strand, within SM_b21505at 1430.850 kb on + strand, within SM_b21505at 1430.851 kb on - strand, within SM_b21505at 1430.853 kb on + strand, within SM_b21505at 1430.854 kb on - strand, within SM_b21505at 1430.931 kb on + strand, within SM_b21505at 1430.932 kb on - strand, within SM_b21505at 1430.932 kb on - strand, within SM_b21505

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml
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1,428,278 - SM_b21503 0.30 -1.9
1,428,511 + SM_b21503 0.47 -2.0
1,428,616 + SM_b21503 0.55 +2.5
1,428,752 - SM_b21503 0.65 +0.7
1,428,781 - SM_b21503 0.67 -1.9
1,428,901 + SM_b21503 0.76 +1.5
1,428,901 + SM_b21503 0.76 +0.2
1,429,034 - SM_b21503 0.86 +1.7
1,429,034 - SM_b21503 0.86 +0.0
1,429,139 + -0.9
1,429,139 + -0.7
1,429,139 + +0.6
1,429,140 - +1.5
1,429,183 + -0.4
1,429,183 + +0.7
1,429,183 + +1.5
1,429,184 - -0.1
1,429,229 + -0.9
1,429,292 + -0.4
1,429,293 - +0.9
1,429,331 + SM_b21504 0.14 +1.5
1,429,332 - SM_b21504 0.14 +0.2
1,429,332 - SM_b21504 0.14 +0.9
1,429,566 - SM_b21504 0.45 -0.6
1,429,784 - SM_b21504 0.74 -1.0
1,429,784 - SM_b21504 0.74 -2.6
1,429,784 - SM_b21504 0.74 -1.9
1,429,785 + SM_b21504 0.74 +0.7
1,429,787 + SM_b21504 0.74 +0.3
1,429,787 + SM_b21504 0.74 +0.9
1,429,787 + SM_b21504 0.74 +0.9
1,429,787 + SM_b21504 0.74 -0.4
1,429,787 + SM_b21504 0.74 -1.6
1,429,788 - SM_b21504 0.74 -2.1
1,429,788 - SM_b21504 0.74 -1.7
1,429,788 - SM_b21504 0.74 +0.7
1,429,788 - SM_b21504 0.74 -0.5
1,429,788 - SM_b21504 0.74 -2.8
1,429,788 - SM_b21504 0.74 -1.1
1,429,808 + SM_b21504 0.77 +0.1
1,429,808 + SM_b21504 0.77 -0.9
1,429,809 - SM_b21504 0.77 -0.3
1,429,809 - SM_b21504 0.77 -1.4
1,429,809 - SM_b21504 0.77 +1.8
1,429,988 + -1.1
1,430,055 + -0.7
1,430,056 - -3.7
1,430,056 - -0.3
1,430,137 - SM_b21505 0.12 -0.6
1,430,145 - SM_b21505 0.13 +0.2
1,430,150 + SM_b21505 0.13 -1.1
1,430,151 - SM_b21505 0.13 +0.8
1,430,341 - SM_b21505 0.27 -1.1
1,430,380 - SM_b21505 0.30 +1.0
1,430,380 - SM_b21505 0.30 -2.8
1,430,706 + SM_b21505 0.55 +0.1
1,430,707 - SM_b21505 0.55 -0.4
1,430,707 - SM_b21505 0.55 -0.2
1,430,850 + SM_b21505 0.66 +0.9
1,430,851 - SM_b21505 0.66 +0.3
1,430,853 + SM_b21505 0.66 -0.6
1,430,854 - SM_b21505 0.66 -0.6
1,430,931 + SM_b21505 0.72 +1.7
1,430,932 - SM_b21505 0.72 +1.1
1,430,932 - SM_b21505 0.72 +1.1

Or see this region's nucleotide sequence