Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21500 and SM_b21501 are separated by 55 nucleotides SM_b21501 and SM_b21502 overlap by 4 nucleotides SM_b21502 and SM_b21503 are separated by 231 nucleotides
SM_b21500: SM_b21500 - glycosyltransferase, at 1,425,015 to 1,426,058
_b21500
SM_b21501: SM_b21501 - hypothetical protein, at 1,426,114 to 1,426,476
_b21501
SM_b21502: SM_b21502 - glycosyltransferase, at 1,426,473 to 1,427,642
_b21502
SM_b21503: SM_b21503 - glycosyltransferase, at 1,427,874 to 1,429,217
_b21503
Position (kb)
1426
1427
1428 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1425.547 kb on + strand, within SM_b21500 at 1425.596 kb on + strand, within SM_b21500 at 1425.596 kb on + strand, within SM_b21500 at 1425.814 kb on + strand, within SM_b21500 at 1425.814 kb on + strand, within SM_b21500 at 1425.815 kb on - strand, within SM_b21500 at 1425.815 kb on - strand, within SM_b21500 at 1426.051 kb on - strand at 1426.214 kb on - strand, within SM_b21501 at 1426.281 kb on + strand, within SM_b21501 at 1426.281 kb on + strand, within SM_b21501 at 1426.281 kb on + strand, within SM_b21501 at 1426.418 kb on + strand, within SM_b21501 at 1426.529 kb on + strand at 1426.530 kb on - strand at 1426.530 kb on - strand at 1426.530 kb on - strand at 1426.530 kb on - strand at 1426.530 kb on - strand at 1426.531 kb on + strand at 1426.870 kb on + strand, within SM_b21502 at 1426.936 kb on + strand, within SM_b21502 at 1426.937 kb on - strand, within SM_b21502 at 1426.937 kb on - strand, within SM_b21502 at 1426.996 kb on + strand, within SM_b21502 at 1426.996 kb on + strand, within SM_b21502 at 1426.997 kb on - strand, within SM_b21502 at 1426.997 kb on - strand, within SM_b21502 at 1427.016 kb on + strand, within SM_b21502 at 1427.095 kb on + strand, within SM_b21502 at 1427.095 kb on + strand, within SM_b21502 at 1427.221 kb on + strand, within SM_b21502 at 1427.221 kb on + strand, within SM_b21502 at 1427.278 kb on - strand, within SM_b21502 at 1427.338 kb on + strand, within SM_b21502 at 1427.338 kb on + strand, within SM_b21502 at 1427.339 kb on - strand, within SM_b21502 at 1427.343 kb on + strand, within SM_b21502 at 1427.343 kb on + strand, within SM_b21502 at 1427.343 kb on + strand, within SM_b21502 at 1427.343 kb on + strand, within SM_b21502 at 1427.343 kb on + strand, within SM_b21502 at 1427.343 kb on + strand, within SM_b21502 at 1427.344 kb on - strand, within SM_b21502 at 1427.344 kb on - strand, within SM_b21502 at 1427.344 kb on - strand, within SM_b21502 at 1427.357 kb on + strand, within SM_b21502 at 1427.358 kb on - strand, within SM_b21502 at 1427.358 kb on - strand, within SM_b21502 at 1427.384 kb on + strand, within SM_b21502 at 1427.384 kb on + strand, within SM_b21502 at 1427.384 kb on + strand, within SM_b21502 at 1427.384 kb on + strand, within SM_b21502 at 1427.385 kb on - strand, within SM_b21502 at 1427.385 kb on - strand, within SM_b21502 at 1427.385 kb on - strand, within SM_b21502 at 1427.385 kb on - strand, within SM_b21502 at 1427.385 kb on - strand, within SM_b21502 at 1427.385 kb on - strand, within SM_b21502 at 1427.742 kb on - strand at 1428.011 kb on + strand, within SM_b21503 at 1428.278 kb on - strand, within SM_b21503 at 1428.511 kb on + strand, within SM_b21503 at 1428.616 kb on + strand, within SM_b21503
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 1,425,547 + SM_b21500 0.51 +1.7 1,425,596 + SM_b21500 0.56 +1.3 1,425,596 + SM_b21500 0.56 +1.6 1,425,814 + SM_b21500 0.77 -0.2 1,425,814 + SM_b21500 0.77 +1.6 1,425,815 - SM_b21500 0.77 +0.8 1,425,815 - SM_b21500 0.77 -2.2 1,426,051 - -0.2 1,426,214 - SM_b21501 0.28 -2.5 1,426,281 + SM_b21501 0.46 -1.9 1,426,281 + SM_b21501 0.46 +2.9 1,426,281 + SM_b21501 0.46 +0.4 1,426,418 + SM_b21501 0.84 +1.3 1,426,529 + -1.1 1,426,530 - +1.9 1,426,530 - +0.7 1,426,530 - +0.9 1,426,530 - -0.8 1,426,530 - +1.2 1,426,531 + -0.1 1,426,870 + SM_b21502 0.34 +4.3 1,426,936 + SM_b21502 0.40 +0.2 1,426,937 - SM_b21502 0.40 -2.7 1,426,937 - SM_b21502 0.40 +0.2 1,426,996 + SM_b21502 0.45 +0.7 1,426,996 + SM_b21502 0.45 +3.5 1,426,997 - SM_b21502 0.45 +0.4 1,426,997 - SM_b21502 0.45 +1.6 1,427,016 + SM_b21502 0.46 +1.3 1,427,095 + SM_b21502 0.53 +0.6 1,427,095 + SM_b21502 0.53 +1.3 1,427,221 + SM_b21502 0.64 -1.6 1,427,221 + SM_b21502 0.64 +0.1 1,427,278 - SM_b21502 0.69 +1.4 1,427,338 + SM_b21502 0.74 -1.4 1,427,338 + SM_b21502 0.74 -1.7 1,427,339 - SM_b21502 0.74 +0.2 1,427,343 + SM_b21502 0.74 -0.3 1,427,343 + SM_b21502 0.74 +1.3 1,427,343 + SM_b21502 0.74 -0.7 1,427,343 + SM_b21502 0.74 +0.3 1,427,343 + SM_b21502 0.74 -2.5 1,427,343 + SM_b21502 0.74 -0.0 1,427,344 - SM_b21502 0.74 -0.9 1,427,344 - SM_b21502 0.74 +1.0 1,427,344 - SM_b21502 0.74 +1.2 1,427,357 + SM_b21502 0.76 +2.8 1,427,358 - SM_b21502 0.76 -0.9 1,427,358 - SM_b21502 0.76 -1.4 1,427,384 + SM_b21502 0.78 +1.4 1,427,384 + SM_b21502 0.78 -3.8 1,427,384 + SM_b21502 0.78 +1.0 1,427,384 + SM_b21502 0.78 +1.6 1,427,385 - SM_b21502 0.78 +0.4 1,427,385 - SM_b21502 0.78 +0.7 1,427,385 - SM_b21502 0.78 +0.7 1,427,385 - SM_b21502 0.78 -1.9 1,427,385 - SM_b21502 0.78 -0.3 1,427,385 - SM_b21502 0.78 -1.2 1,427,742 - -0.5 1,428,011 + SM_b21503 0.10 +1.6 1,428,278 - SM_b21503 0.30 -1.9 1,428,511 + SM_b21503 0.47 -2.0 1,428,616 + SM_b21503 0.55 +2.5
Or see this region's nucleotide sequence