Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21470

Experiment: Polymyxin B sulfate 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21468 and SM_b21469 are separated by 96 nucleotidesSM_b21469 and SM_b21470 are separated by 109 nucleotidesSM_b21470 and SM_b21471 overlap by 23 nucleotidesSM_b21471 and SM_b21472 are separated by 43 nucleotidesSM_b21472 and SM_b21473 are separated by 40 nucleotides SM_b21468: SM_b21468 - hypothetical protein, at 1,395,922 to 1,397,019 _b21468 SM_b21469: SM_b21469 - hypothetical protein, at 1,397,116 to 1,397,625 _b21469 SM_b21470: SM_b21470 - hypothetical protein, at 1,397,735 to 1,398,016 _b21470 SM_b21471: SM_b21471 - hypothetical protein, at 1,397,994 to 1,398,242 _b21471 SM_b21472: SM_b21472 - hypothetical protein, at 1,398,286 to 1,398,825 _b21472 SM_b21473: SM_b21473 - hypothetical protein, at 1,398,866 to 1,399,300 _b21473 Position (kb) 1397 1398 1399Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1396.848 kb on - strand, within SM_b21468at 1397.096 kb on + strandat 1397.135 kb on + strandat 1397.135 kb on + strandat 1397.135 kb on + strandat 1397.135 kb on + strandat 1397.135 kb on + strandat 1397.135 kb on + strandat 1397.136 kb on - strandat 1397.139 kb on + strandat 1397.139 kb on + strandat 1397.139 kb on + strandat 1397.139 kb on + strandat 1397.140 kb on - strandat 1397.140 kb on - strandat 1397.140 kb on - strandat 1397.140 kb on - strandat 1397.140 kb on - strandat 1397.140 kb on - strandat 1397.140 kb on - strandat 1397.140 kb on - strandat 1397.142 kb on - strandat 1397.189 kb on + strand, within SM_b21469at 1397.260 kb on + strand, within SM_b21469at 1397.265 kb on - strand, within SM_b21469at 1397.265 kb on - strand, within SM_b21469at 1397.394 kb on + strand, within SM_b21469at 1397.395 kb on - strand, within SM_b21469at 1397.395 kb on - strand, within SM_b21469at 1397.432 kb on - strand, within SM_b21469at 1397.553 kb on - strand, within SM_b21469at 1397.581 kb on - strandat 1397.583 kb on - strandat 1397.604 kb on + strandat 1397.604 kb on + strandat 1397.605 kb on - strandat 1397.623 kb on + strandat 1397.624 kb on - strandat 1397.624 kb on - strandat 1397.738 kb on + strandat 1397.739 kb on - strandat 1397.767 kb on + strand, within SM_b21470at 1397.861 kb on + strand, within SM_b21470at 1397.864 kb on + strand, within SM_b21470at 1397.864 kb on + strand, within SM_b21470at 1397.865 kb on - strand, within SM_b21470at 1397.877 kb on + strand, within SM_b21470at 1398.180 kb on + strand, within SM_b21471at 1398.180 kb on + strand, within SM_b21471at 1398.181 kb on - strand, within SM_b21471at 1398.181 kb on - strand, within SM_b21471at 1398.231 kb on - strandat 1398.231 kb on - strandat 1398.308 kb on + strandat 1398.309 kb on - strandat 1398.438 kb on + strand, within SM_b21472at 1398.452 kb on - strand, within SM_b21472at 1398.488 kb on + strand, within SM_b21472at 1398.489 kb on - strand, within SM_b21472at 1398.489 kb on - strand, within SM_b21472at 1398.495 kb on - strandat 1398.682 kb on + strand, within SM_b21472at 1398.682 kb on + strand, within SM_b21472at 1398.682 kb on + strand, within SM_b21472at 1398.682 kb on + strand, within SM_b21472at 1398.682 kb on + strand, within SM_b21472at 1398.683 kb on - strand, within SM_b21472at 1398.683 kb on - strand, within SM_b21472at 1398.683 kb on - strand, within SM_b21472at 1398.683 kb on - strand, within SM_b21472at 1398.683 kb on - strand, within SM_b21472at 1398.686 kb on + strand, within SM_b21472at 1398.686 kb on + strand, within SM_b21472at 1398.686 kb on + strand, within SM_b21472at 1398.687 kb on - strand, within SM_b21472at 1398.768 kb on + strand, within SM_b21472at 1398.769 kb on - strandat 1398.928 kb on + strand, within SM_b21473at 1398.928 kb on + strand, within SM_b21473at 1398.944 kb on - strand, within SM_b21473

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml
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1,396,848 - SM_b21468 0.84 +2.9
1,397,096 + -1.4
1,397,135 + +0.3
1,397,135 + -1.4
1,397,135 + +0.3
1,397,135 + -0.3
1,397,135 + -3.4
1,397,135 + -2.5
1,397,136 - +0.8
1,397,139 + -0.8
1,397,139 + -2.1
1,397,139 + -0.3
1,397,139 + +2.5
1,397,140 - +0.9
1,397,140 - -1.1
1,397,140 - +0.2
1,397,140 - -0.2
1,397,140 - +1.2
1,397,140 - -1.5
1,397,140 - -3.2
1,397,140 - +2.0
1,397,142 - -3.1
1,397,189 + SM_b21469 0.14 -1.1
1,397,260 + SM_b21469 0.28 -0.2
1,397,265 - SM_b21469 0.29 +1.1
1,397,265 - SM_b21469 0.29 +1.9
1,397,394 + SM_b21469 0.55 -2.5
1,397,395 - SM_b21469 0.55 +1.7
1,397,395 - SM_b21469 0.55 -0.7
1,397,432 - SM_b21469 0.62 +0.8
1,397,553 - SM_b21469 0.86 +0.6
1,397,581 - -0.7
1,397,583 - -0.1
1,397,604 + -1.7
1,397,604 + -0.6
1,397,605 - +0.0
1,397,623 + -2.2
1,397,624 - -0.3
1,397,624 - +0.7
1,397,738 + +0.2
1,397,739 - -2.1
1,397,767 + SM_b21470 0.11 +2.1
1,397,861 + SM_b21470 0.45 +0.4
1,397,864 + SM_b21470 0.46 +0.2
1,397,864 + SM_b21470 0.46 -3.0
1,397,865 - SM_b21470 0.46 -0.1
1,397,877 + SM_b21470 0.50 +1.6
1,398,180 + SM_b21471 0.75 -2.2
1,398,180 + SM_b21471 0.75 -0.1
1,398,181 - SM_b21471 0.75 -0.3
1,398,181 - SM_b21471 0.75 +0.5
1,398,231 - -0.4
1,398,231 - +0.6
1,398,308 + +1.0
1,398,309 - -1.9
1,398,438 + SM_b21472 0.28 -2.1
1,398,452 - SM_b21472 0.31 -0.7
1,398,488 + SM_b21472 0.37 +0.4
1,398,489 - SM_b21472 0.38 +0.6
1,398,489 - SM_b21472 0.38 -1.9
1,398,495 - -0.7
1,398,682 + SM_b21472 0.73 +0.9
1,398,682 + SM_b21472 0.73 -2.8
1,398,682 + SM_b21472 0.73 -2.1
1,398,682 + SM_b21472 0.73 +0.5
1,398,682 + SM_b21472 0.73 +0.5
1,398,683 - SM_b21472 0.74 +0.1
1,398,683 - SM_b21472 0.74 -3.2
1,398,683 - SM_b21472 0.74 -0.1
1,398,683 - SM_b21472 0.74 -1.3
1,398,683 - SM_b21472 0.74 -1.8
1,398,686 + SM_b21472 0.74 -0.5
1,398,686 + SM_b21472 0.74 +0.0
1,398,686 + SM_b21472 0.74 -2.2
1,398,687 - SM_b21472 0.74 -1.1
1,398,768 + SM_b21472 0.89 -1.6
1,398,769 - +4.1
1,398,928 + SM_b21473 0.14 +0.0
1,398,928 + SM_b21473 0.14 +0.4
1,398,944 - SM_b21473 0.18 +0.1

Or see this region's nucleotide sequence