Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21438

Experiment: Polymyxin B sulfate 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21436 and SM_b21437 overlap by 4 nucleotidesSM_b21437 and SM_b21438 are separated by 83 nucleotidesSM_b21438 and SM_b21439 are separated by 135 nucleotidesSM_b21439 and SM_b21440 are separated by 308 nucleotides SM_b21436: SM_b21436 - C4-dicarboxylate transport system, permease large protein transmembrane, at 1,366,387 to 1,367,667 _b21436 SM_b21437: SM_b21437 - C4-dicarboxylate transport system, permease small protein transmembrane, at 1,367,664 to 1,368,140 _b21437 SM_b21438: SM_b21438 - C4-dicarboxylate transport system, C4-dicarboxylate-binding protein precursor signal peptide, at 1,368,224 to 1,369,222 _b21438 SM_b21439: SM_b21439 - translation initiation inhibitor protein, at 1,369,358 to 1,369,750 _b21439 SM_b21440: SM_b21440 - hypothetical protein, at 1,370,059 to 1,370,493 _b21440 Position (kb) 1368 1369 1370Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1367.551 kb on + strandat 1367.552 kb on - strandat 1367.570 kb on + strandat 1367.731 kb on + strand, within SM_b21437at 1367.790 kb on + strand, within SM_b21437at 1367.790 kb on + strand, within SM_b21437at 1367.791 kb on - strand, within SM_b21437at 1367.850 kb on + strand, within SM_b21437at 1368.017 kb on - strand, within SM_b21437at 1368.087 kb on + strand, within SM_b21437at 1368.096 kb on + strandat 1368.097 kb on - strandat 1368.097 kb on - strandat 1368.097 kb on - strandat 1368.097 kb on - strandat 1368.225 kb on + strandat 1368.225 kb on + strandat 1368.235 kb on - strandat 1368.529 kb on - strand, within SM_b21438at 1368.529 kb on - strand, within SM_b21438at 1368.543 kb on + strand, within SM_b21438at 1368.543 kb on + strand, within SM_b21438at 1368.616 kb on - strand, within SM_b21438at 1368.617 kb on + strand, within SM_b21438at 1368.617 kb on + strand, within SM_b21438at 1368.618 kb on - strand, within SM_b21438at 1368.618 kb on - strand, within SM_b21438at 1368.879 kb on + strand, within SM_b21438at 1368.880 kb on - strand, within SM_b21438at 1368.880 kb on - strand, within SM_b21438at 1368.959 kb on + strand, within SM_b21438at 1368.959 kb on + strand, within SM_b21438at 1368.959 kb on + strand, within SM_b21438at 1369.087 kb on + strand, within SM_b21438at 1369.088 kb on - strand, within SM_b21438at 1369.255 kb on + strandat 1369.255 kb on + strandat 1369.255 kb on + strandat 1369.255 kb on + strandat 1369.256 kb on - strandat 1369.258 kb on + strandat 1369.398 kb on + strand, within SM_b21439at 1369.399 kb on - strand, within SM_b21439at 1369.399 kb on - strand, within SM_b21439at 1369.651 kb on + strand, within SM_b21439at 1369.651 kb on + strand, within SM_b21439at 1369.652 kb on - strand, within SM_b21439at 1369.654 kb on - strand, within SM_b21439at 1369.765 kb on + strandat 1369.766 kb on - strandat 1369.793 kb on - strandat 1369.829 kb on + strandat 1369.829 kb on + strandat 1369.829 kb on + strandat 1369.829 kb on + strandat 1369.830 kb on - strandat 1369.830 kb on - strandat 1369.832 kb on - strandat 1369.832 kb on - strandat 1369.838 kb on - strandat 1369.842 kb on + strandat 1369.842 kb on + strandat 1369.842 kb on + strandat 1369.843 kb on - strandat 1369.843 kb on - strandat 1369.843 kb on - strandat 1369.843 kb on - strandat 1369.843 kb on - strandat 1369.909 kb on + strandat 1369.909 kb on + strandat 1369.960 kb on + strandat 1369.960 kb on + strandat 1369.961 kb on - strandat 1370.073 kb on + strandat 1370.074 kb on - strandat 1370.074 kb on - strandat 1370.111 kb on + strand, within SM_b21440at 1370.111 kb on + strand, within SM_b21440

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml
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1,367,551 + +0.9
1,367,552 - -3.4
1,367,570 + -1.4
1,367,731 + SM_b21437 0.14 +0.2
1,367,790 + SM_b21437 0.26 +0.8
1,367,790 + SM_b21437 0.26 +0.9
1,367,791 - SM_b21437 0.27 -3.2
1,367,850 + SM_b21437 0.39 +0.2
1,368,017 - SM_b21437 0.74 +0.3
1,368,087 + SM_b21437 0.89 -0.1
1,368,096 + +0.2
1,368,097 - -1.8
1,368,097 - -0.5
1,368,097 - -0.5
1,368,097 - -0.2
1,368,225 + +1.4
1,368,225 + +0.5
1,368,235 - +1.1
1,368,529 - SM_b21438 0.31 +1.3
1,368,529 - SM_b21438 0.31 +0.9
1,368,543 + SM_b21438 0.32 +0.0
1,368,543 + SM_b21438 0.32 +1.2
1,368,616 - SM_b21438 0.39 +2.3
1,368,617 + SM_b21438 0.39 +3.5
1,368,617 + SM_b21438 0.39 +0.2
1,368,618 - SM_b21438 0.39 +1.2
1,368,618 - SM_b21438 0.39 +2.3
1,368,879 + SM_b21438 0.66 +3.3
1,368,880 - SM_b21438 0.66 -3.7
1,368,880 - SM_b21438 0.66 +1.1
1,368,959 + SM_b21438 0.74 -3.2
1,368,959 + SM_b21438 0.74 +1.5
1,368,959 + SM_b21438 0.74 +0.6
1,369,087 + SM_b21438 0.86 -0.1
1,369,088 - SM_b21438 0.86 +0.2
1,369,255 + -2.8
1,369,255 + -1.5
1,369,255 + +2.5
1,369,255 + -1.1
1,369,256 - -1.7
1,369,258 + -1.0
1,369,398 + SM_b21439 0.10 -0.6
1,369,399 - SM_b21439 0.10 +0.9
1,369,399 - SM_b21439 0.10 +0.2
1,369,651 + SM_b21439 0.75 +1.6
1,369,651 + SM_b21439 0.75 -0.1
1,369,652 - SM_b21439 0.75 -0.5
1,369,654 - SM_b21439 0.75 -1.4
1,369,765 + +0.2
1,369,766 - +0.1
1,369,793 - +3.4
1,369,829 + -0.7
1,369,829 + -0.9
1,369,829 + +0.2
1,369,829 + -3.1
1,369,830 - -1.1
1,369,830 - +4.1
1,369,832 - +0.6
1,369,832 - -0.3
1,369,838 - -0.3
1,369,842 + +1.6
1,369,842 + -1.7
1,369,842 + -3.2
1,369,843 - +0.3
1,369,843 - +1.9
1,369,843 - -0.6
1,369,843 - -0.5
1,369,843 - -0.2
1,369,909 + -0.3
1,369,909 + -0.0
1,369,960 + -3.9
1,369,960 + +0.6
1,369,961 - -0.1
1,370,073 + -1.5
1,370,074 - +0.7
1,370,074 - -3.7
1,370,111 + SM_b21440 0.12 -0.8
1,370,111 + SM_b21440 0.12 +1.3

Or see this region's nucleotide sequence