Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21373 and SM_b21374 are separated by 2 nucleotides SM_b21374 and SM_b21375 are separated by 23 nucleotides SM_b21375 and SM_b21376 overlap by 4 nucleotides
SM_b21373: SM_b21373 - D-tagatose 6-phosphate 4-epimerase [EC:5.1.3.40] (from data) , at 1,037,716 to 1,038,996
_b21373
SM_b21374: SM_b21374 - tagatose kinase (EC 2.7.1.101) (from data) , at 1,038,999 to 1,039,940
_b21374
SM_b21375: SM_b21375 - sugar uptake ABC transporter permease, at 1,039,964 to 1,040,926
_b21375
SM_b21376: SM_b21376 - sugar uptake ABC transporter ATP-binding protein, at 1,040,923 to 1,042,434
_b21376
Position (kb)
1038
1039
1040 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1038.278 kb on + strand at 1038.279 kb on - strand, within SM_b21373 at 1038.436 kb on + strand at 1038.437 kb on - strand, within SM_b21373 at 1038.437 kb on - strand, within SM_b21373 at 1038.644 kb on + strand, within SM_b21373 at 1038.645 kb on - strand, within SM_b21373 at 1038.816 kb on - strand, within SM_b21373 at 1039.392 kb on - strand, within SM_b21374 at 1039.392 kb on - strand, within SM_b21374 at 1039.410 kb on - strand, within SM_b21374 at 1039.929 kb on + strand at 1039.930 kb on - strand at 1039.930 kb on - strand at 1040.040 kb on + strand at 1040.041 kb on - strand at 1040.047 kb on - strand at 1040.047 kb on - strand at 1040.184 kb on + strand, within SM_b21375 at 1040.521 kb on - strand, within SM_b21375 at 1040.524 kb on + strand, within SM_b21375 at 1040.524 kb on + strand, within SM_b21375 at 1040.524 kb on + strand, within SM_b21375 at 1040.525 kb on - strand, within SM_b21375 at 1040.798 kb on + strand, within SM_b21375 at 1040.874 kb on + strand at 1040.874 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 1,038,278 + +0.9 1,038,279 - SM_b21373 0.44 -0.1 1,038,436 + -0.7 1,038,437 - SM_b21373 0.56 -0.8 1,038,437 - SM_b21373 0.56 +0.3 1,038,644 + SM_b21373 0.72 -0.7 1,038,645 - SM_b21373 0.73 -0.1 1,038,816 - SM_b21373 0.86 -0.7 1,039,392 - SM_b21374 0.42 -2.7 1,039,392 - SM_b21374 0.42 +2.0 1,039,410 - SM_b21374 0.44 +1.2 1,039,929 + +0.5 1,039,930 - +1.7 1,039,930 - +3.4 1,040,040 + +1.3 1,040,041 - -0.2 1,040,047 - +0.4 1,040,047 - +1.7 1,040,184 + SM_b21375 0.23 +0.2 1,040,521 - SM_b21375 0.58 +0.5 1,040,524 + SM_b21375 0.58 +0.2 1,040,524 + SM_b21375 0.58 +0.3 1,040,524 + SM_b21375 0.58 -1.3 1,040,525 - SM_b21375 0.58 -0.2 1,040,798 + SM_b21375 0.87 -0.8 1,040,874 + +0.9 1,040,874 + +0.4
Or see this region's nucleotide sequence