Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21337 and SM_b21338 are separated by 3 nucleotides SM_b21338 and SM_b21339 are separated by 1 nucleotides SM_b21339 and SM_b21340 overlap by 28 nucleotides
SM_b21337: SM_b21337 - iron-sulfur-binding protein, at 1,003,886 to 1,004,548
_b21337
SM_b21338: SM_b21338 - molybdopterin-binding protein, at 1,004,552 to 1,005,457
_b21338
SM_b21339: SM_b21339 - N-terminal part of the catalytic subunit of an oxidoreductase like aldehyde oxidase or xanthine dehydrogenase, at 1,005,459 to 1,005,791
_b21339
SM_b21340: SM_b21340 - hypothetical protein, at 1,005,764 to 1,006,831
_b21340
Position (kb)
1005
1006 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 1004.483 kb on - strand at 1004.502 kb on - strand at 1004.567 kb on + strand at 1004.777 kb on - strand at 1004.777 kb on - strand, within SM_b21338 at 1004.860 kb on - strand, within SM_b21338 at 1004.860 kb on - strand, within SM_b21338 at 1004.872 kb on + strand, within SM_b21338 at 1004.919 kb on - strand, within SM_b21338 at 1005.131 kb on + strand, within SM_b21338 at 1005.200 kb on - strand, within SM_b21338 at 1005.261 kb on - strand, within SM_b21338 at 1005.585 kb on - strand, within SM_b21339 at 1005.607 kb on + strand, within SM_b21339 at 1005.659 kb on + strand, within SM_b21339 at 1005.660 kb on - strand, within SM_b21339 at 1005.663 kb on + strand, within SM_b21339 at 1005.663 kb on + strand, within SM_b21339 at 1005.663 kb on + strand, within SM_b21339 at 1005.664 kb on - strand, within SM_b21339 at 1005.664 kb on - strand, within SM_b21339 at 1005.664 kb on - strand, within SM_b21339 at 1005.664 kb on - strand, within SM_b21339 at 1005.669 kb on + strand, within SM_b21339 at 1005.669 kb on + strand, within SM_b21339 at 1005.670 kb on - strand, within SM_b21339 at 1005.782 kb on - strand at 1005.782 kb on - strand at 1005.782 kb on - strand at 1006.002 kb on - strand, within SM_b21340 at 1006.002 kb on - strand, within SM_b21340 at 1006.002 kb on - strand, within SM_b21340 at 1006.002 kb on - strand, within SM_b21340 at 1006.002 kb on - strand, within SM_b21340 at 1006.291 kb on + strand, within SM_b21340 at 1006.362 kb on - strand, within SM_b21340 at 1006.362 kb on - strand, within SM_b21340 at 1006.474 kb on + strand, within SM_b21340 at 1006.475 kb on - strand, within SM_b21340 at 1006.572 kb on - strand, within SM_b21340 at 1006.621 kb on + strand, within SM_b21340 at 1006.621 kb on + strand, within SM_b21340 at 1006.622 kb on - strand, within SM_b21340 at 1006.622 kb on - strand, within SM_b21340 at 1006.748 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 1,004,483 - -0.5 1,004,502 - -1.1 1,004,567 + -1.6 1,004,777 - -0.1 1,004,777 - SM_b21338 0.25 +0.9 1,004,860 - SM_b21338 0.34 -0.3 1,004,860 - SM_b21338 0.34 -0.6 1,004,872 + SM_b21338 0.35 +0.4 1,004,919 - SM_b21338 0.41 +0.9 1,005,131 + SM_b21338 0.64 -2.4 1,005,200 - SM_b21338 0.72 -0.3 1,005,261 - SM_b21338 0.78 -1.0 1,005,585 - SM_b21339 0.38 -0.3 1,005,607 + SM_b21339 0.44 -0.6 1,005,659 + SM_b21339 0.60 +1.5 1,005,660 - SM_b21339 0.60 +0.1 1,005,663 + SM_b21339 0.61 -0.8 1,005,663 + SM_b21339 0.61 -2.6 1,005,663 + SM_b21339 0.61 -0.1 1,005,664 - SM_b21339 0.62 -0.4 1,005,664 - SM_b21339 0.62 +0.9 1,005,664 - SM_b21339 0.62 -1.5 1,005,664 - SM_b21339 0.62 -0.8 1,005,669 + SM_b21339 0.63 -0.9 1,005,669 + SM_b21339 0.63 +2.0 1,005,670 - SM_b21339 0.63 -0.1 1,005,782 - -0.7 1,005,782 - +0.3 1,005,782 - -2.9 1,006,002 - SM_b21340 0.22 -1.9 1,006,002 - SM_b21340 0.22 +1.3 1,006,002 - SM_b21340 0.22 +0.6 1,006,002 - SM_b21340 0.22 -2.1 1,006,002 - SM_b21340 0.22 -0.1 1,006,291 + SM_b21340 0.49 -1.4 1,006,362 - SM_b21340 0.56 +0.0 1,006,362 - SM_b21340 0.56 -2.6 1,006,474 + SM_b21340 0.66 -0.2 1,006,475 - SM_b21340 0.67 +1.1 1,006,572 - SM_b21340 0.76 +3.5 1,006,621 + SM_b21340 0.80 +0.5 1,006,621 + SM_b21340 0.80 +5.6 1,006,622 - SM_b21340 0.80 +0.9 1,006,622 - SM_b21340 0.80 -0.4 1,006,748 + +0.2
Or see this region's nucleotide sequence