Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21301 and SM_b21302 are separated by 124 nucleotides SM_b21302 and SM_b21303 are separated by 20 nucleotides SM_b21303 and SM_b21304 are separated by 33 nucleotides
SM_b21301: SM_b21301 - ly membrane-anchored aldehyde dehydrogenase, at 882,510 to 884,894
_b21301
SM_b21302: SM_b21302 - hypothetical protein, at 885,019 to 885,474
_b21302
SM_b21303: SM_b21303 - hypothetical protein, at 885,495 to 885,923
_b21303
SM_b21304: SM_b21304 - NG,NG-dimethylarginine dimethylaminohydrolase (dimethylargininase) protein, at 885,957 to 886,751
_b21304
Position (kb) 885
886 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 884.601 kb on + strand, within SM_b21301 at 884.602 kb on - strand, within SM_b21301 at 884.646 kb on - strand, within SM_b21301 at 884.646 kb on - strand, within SM_b21301 at 884.777 kb on + strand at 884.778 kb on - strand at 884.892 kb on + strand at 885.031 kb on - strand at 885.347 kb on - strand, within SM_b21302 at 885.370 kb on + strand, within SM_b21302 at 885.370 kb on + strand, within SM_b21302 at 885.425 kb on - strand, within SM_b21302 at 885.487 kb on + strand at 885.541 kb on + strand, within SM_b21303 at 885.645 kb on + strand, within SM_b21303 at 885.645 kb on + strand, within SM_b21303 at 885.645 kb on + strand, within SM_b21303 at 885.646 kb on - strand, within SM_b21303 at 885.646 kb on - strand, within SM_b21303 at 885.646 kb on - strand, within SM_b21303 at 885.728 kb on + strand, within SM_b21303 at 885.729 kb on - strand, within SM_b21303 at 885.729 kb on - strand, within SM_b21303 at 885.905 kb on - strand at 885.905 kb on - strand at 886.056 kb on + strand, within SM_b21304 at 886.057 kb on - strand, within SM_b21304 at 886.086 kb on + strand, within SM_b21304 at 886.086 kb on + strand, within SM_b21304 at 886.087 kb on - strand, within SM_b21304 at 886.690 kb on + strand at 886.691 kb on - strand at 886.691 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 884,601 + SM_b21301 0.88 -0.1 884,602 - SM_b21301 0.88 -0.1 884,646 - SM_b21301 0.90 -1.2 884,646 - SM_b21301 0.90 +0.8 884,777 + +0.1 884,778 - -2.6 884,892 + +0.4 885,031 - -0.3 885,347 - SM_b21302 0.72 +0.2 885,370 + SM_b21302 0.77 +0.4 885,370 + SM_b21302 0.77 -1.1 885,425 - SM_b21302 0.89 -1.0 885,487 + -0.7 885,541 + SM_b21303 0.11 -1.7 885,645 + SM_b21303 0.35 +0.7 885,645 + SM_b21303 0.35 -1.5 885,645 + SM_b21303 0.35 -3.9 885,646 - SM_b21303 0.35 -4.4 885,646 - SM_b21303 0.35 +0.1 885,646 - SM_b21303 0.35 -2.2 885,728 + SM_b21303 0.54 -0.5 885,729 - SM_b21303 0.55 -0.1 885,729 - SM_b21303 0.55 -2.8 885,905 - +0.5 885,905 - +1.2 886,056 + SM_b21304 0.12 +0.9 886,057 - SM_b21304 0.13 +0.1 886,086 + SM_b21304 0.16 -2.1 886,086 + SM_b21304 0.16 +2.4 886,087 - SM_b21304 0.16 +0.6 886,690 + +0.8 886,691 - -0.6 886,691 - +0.7
Or see this region's nucleotide sequence