Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21240

Experiment: Polymyxin B sulfate 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21239 and SM_b21240 are separated by 154 nucleotidesSM_b21240 and SM_b21241 are separated by 313 nucleotides SM_b21239: SM_b21239 - pectate lysase, at 804,362 to 805,600 _b21239 SM_b21240: SM_b21240 - MPA1 family protein, at 805,755 to 807,743 _b21240 SM_b21241: SM_b21241 - hypothetical protein, at 808,057 to 809,349 _b21241 Position (kb) 805 806 807 808Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 804.808 kb on + strand, within SM_b21239at 804.808 kb on + strand, within SM_b21239at 804.808 kb on + strand, within SM_b21239at 804.808 kb on + strand, within SM_b21239at 805.007 kb on + strand, within SM_b21239at 805.007 kb on + strand, within SM_b21239at 805.007 kb on + strand, within SM_b21239at 805.008 kb on - strand, within SM_b21239at 805.008 kb on - strand, within SM_b21239at 805.014 kb on + strand, within SM_b21239at 805.048 kb on + strand, within SM_b21239at 805.049 kb on - strand, within SM_b21239at 805.064 kb on + strand, within SM_b21239at 805.065 kb on - strand, within SM_b21239at 805.142 kb on + strand, within SM_b21239at 805.143 kb on - strand, within SM_b21239at 805.143 kb on - strand, within SM_b21239at 805.157 kb on + strandat 805.158 kb on - strand, within SM_b21239at 805.158 kb on - strand, within SM_b21239at 805.286 kb on + strand, within SM_b21239at 805.287 kb on - strand, within SM_b21239at 805.465 kb on + strand, within SM_b21239at 805.466 kb on - strand, within SM_b21239at 805.466 kb on - strand, within SM_b21239at 805.598 kb on + strandat 805.599 kb on - strandat 805.599 kb on - strandat 805.599 kb on - strandat 805.746 kb on + strandat 805.746 kb on + strandat 805.747 kb on - strandat 805.747 kb on - strandat 805.757 kb on - strandat 806.040 kb on + strand, within SM_b21240at 806.040 kb on + strand, within SM_b21240at 806.041 kb on - strand, within SM_b21240at 806.042 kb on + strand, within SM_b21240at 806.042 kb on + strand, within SM_b21240at 806.287 kb on + strand, within SM_b21240at 806.287 kb on + strand, within SM_b21240at 806.288 kb on - strand, within SM_b21240at 806.501 kb on + strand, within SM_b21240at 806.502 kb on - strand, within SM_b21240at 806.503 kb on + strand, within SM_b21240at 806.503 kb on + strand, within SM_b21240at 806.503 kb on + strand, within SM_b21240at 806.503 kb on + strand, within SM_b21240at 806.503 kb on + strand, within SM_b21240at 806.504 kb on - strand, within SM_b21240at 806.504 kb on - strand, within SM_b21240at 806.604 kb on + strand, within SM_b21240at 806.605 kb on - strand, within SM_b21240at 806.608 kb on + strand, within SM_b21240at 806.608 kb on + strand, within SM_b21240at 806.609 kb on - strand, within SM_b21240at 806.739 kb on - strand, within SM_b21240at 806.751 kb on - strand, within SM_b21240at 806.787 kb on + strand, within SM_b21240at 806.837 kb on + strand, within SM_b21240at 806.838 kb on - strand, within SM_b21240at 806.877 kb on + strand, within SM_b21240at 806.878 kb on - strand, within SM_b21240at 806.878 kb on - strand, within SM_b21240at 806.878 kb on - strand, within SM_b21240at 806.921 kb on - strand, within SM_b21240at 806.981 kb on + strand, within SM_b21240at 806.982 kb on - strand, within SM_b21240at 806.982 kb on - strand, within SM_b21240at 806.982 kb on - strand, within SM_b21240at 807.097 kb on + strandat 807.097 kb on + strand, within SM_b21240at 807.097 kb on + strand, within SM_b21240at 807.098 kb on - strand, within SM_b21240at 807.154 kb on - strand, within SM_b21240at 807.349 kb on + strand, within SM_b21240at 807.350 kb on - strand, within SM_b21240at 807.530 kb on + strand, within SM_b21240at 807.530 kb on + strand, within SM_b21240at 807.537 kb on - strand, within SM_b21240at 807.537 kb on - strand, within SM_b21240at 807.539 kb on - strand, within SM_b21240at 807.714 kb on + strandat 807.755 kb on - strandat 807.818 kb on - strandat 807.912 kb on - strandat 807.914 kb on + strandat 807.914 kb on + strandat 807.914 kb on + strandat 807.914 kb on + strandat 807.915 kb on - strandat 807.963 kb on + strandat 808.101 kb on + strandat 808.101 kb on + strandat 808.108 kb on + strandat 808.151 kb on + strandat 808.151 kb on + strandat 808.152 kb on - strandat 808.152 kb on - strandat 808.152 kb on - strandat 808.152 kb on - strandat 808.155 kb on + strandat 808.155 kb on + strandat 808.155 kb on + strandat 808.156 kb on - strandat 808.156 kb on - strandat 808.156 kb on - strandat 808.156 kb on - strandat 808.156 kb on - strandat 808.156 kb on - strandat 808.331 kb on + strand, within SM_b21241at 808.331 kb on + strand, within SM_b21241at 808.331 kb on + strand, within SM_b21241at 808.332 kb on - strand, within SM_b21241at 808.335 kb on + strand, within SM_b21241at 808.336 kb on - strand, within SM_b21241at 808.421 kb on - strand, within SM_b21241at 808.422 kb on + strand, within SM_b21241at 808.422 kb on + strand, within SM_b21241at 808.422 kb on + strand, within SM_b21241at 808.422 kb on + strand, within SM_b21241at 808.423 kb on - strand, within SM_b21241at 808.423 kb on - strand, within SM_b21241at 808.423 kb on - strand, within SM_b21241at 808.423 kb on - strandat 808.423 kb on - strand, within SM_b21241at 808.477 kb on + strand, within SM_b21241at 808.477 kb on + strand, within SM_b21241at 808.539 kb on + strand, within SM_b21241at 808.540 kb on - strand, within SM_b21241at 808.549 kb on + strand, within SM_b21241at 808.643 kb on - strand, within SM_b21241

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml
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804,808 + SM_b21239 0.36 -0.8
804,808 + SM_b21239 0.36 +2.6
804,808 + SM_b21239 0.36 -0.8
804,808 + SM_b21239 0.36 -0.2
805,007 + SM_b21239 0.52 -0.7
805,007 + SM_b21239 0.52 -1.2
805,007 + SM_b21239 0.52 +1.6
805,008 - SM_b21239 0.52 +1.2
805,008 - SM_b21239 0.52 -0.3
805,014 + SM_b21239 0.53 -2.5
805,048 + SM_b21239 0.55 +1.4
805,049 - SM_b21239 0.55 +2.1
805,064 + SM_b21239 0.57 -2.3
805,065 - SM_b21239 0.57 +0.6
805,142 + SM_b21239 0.63 -0.8
805,143 - SM_b21239 0.63 -0.6
805,143 - SM_b21239 0.63 -0.2
805,157 + +0.8
805,158 - SM_b21239 0.64 +3.4
805,158 - SM_b21239 0.64 +1.2
805,286 + SM_b21239 0.75 -1.3
805,287 - SM_b21239 0.75 +0.2
805,465 + SM_b21239 0.89 -0.6
805,466 - SM_b21239 0.89 +0.5
805,466 - SM_b21239 0.89 -0.8
805,598 + -1.2
805,599 - -0.2
805,599 - +0.8
805,599 - -2.1
805,746 + +0.3
805,746 + +4.5
805,747 - +2.2
805,747 - -1.5
805,757 - -1.0
806,040 + SM_b21240 0.14 +1.8
806,040 + SM_b21240 0.14 -0.5
806,041 - SM_b21240 0.14 +3.8
806,042 + SM_b21240 0.14 -0.6
806,042 + SM_b21240 0.14 -0.6
806,287 + SM_b21240 0.27 -0.8
806,287 + SM_b21240 0.27 -0.8
806,288 - SM_b21240 0.27 -0.8
806,501 + SM_b21240 0.38 -0.1
806,502 - SM_b21240 0.38 -1.3
806,503 + SM_b21240 0.38 +0.6
806,503 + SM_b21240 0.38 -1.0
806,503 + SM_b21240 0.38 -0.8
806,503 + SM_b21240 0.38 -0.3
806,503 + SM_b21240 0.38 +1.2
806,504 - SM_b21240 0.38 +0.1
806,504 - SM_b21240 0.38 +0.7
806,604 + SM_b21240 0.43 -2.0
806,605 - SM_b21240 0.43 +1.3
806,608 + SM_b21240 0.43 -3.0
806,608 + SM_b21240 0.43 +0.1
806,609 - SM_b21240 0.43 -0.2
806,739 - SM_b21240 0.49 -2.0
806,751 - SM_b21240 0.50 +0.2
806,787 + SM_b21240 0.52 -0.2
806,837 + SM_b21240 0.54 -0.6
806,838 - SM_b21240 0.54 -0.6
806,877 + SM_b21240 0.56 +0.4
806,878 - SM_b21240 0.56 -0.1
806,878 - SM_b21240 0.56 -0.8
806,878 - SM_b21240 0.56 -0.1
806,921 - SM_b21240 0.59 -0.4
806,981 + SM_b21240 0.62 -0.1
806,982 - SM_b21240 0.62 +0.3
806,982 - SM_b21240 0.62 -0.6
806,982 - SM_b21240 0.62 -1.5
807,097 + +0.8
807,097 + SM_b21240 0.67 -2.2
807,097 + SM_b21240 0.67 -0.8
807,098 - SM_b21240 0.68 +1.3
807,154 - SM_b21240 0.70 +0.8
807,349 + SM_b21240 0.80 +1.4
807,350 - SM_b21240 0.80 +0.7
807,530 + SM_b21240 0.89 +2.0
807,530 + SM_b21240 0.89 -0.8
807,537 - SM_b21240 0.90 +1.2
807,537 - SM_b21240 0.90 -0.5
807,539 - SM_b21240 0.90 +0.9
807,714 + +0.3
807,755 - -2.0
807,818 - +0.4
807,912 - -3.0
807,914 + +1.0
807,914 + -0.8
807,914 + +0.0
807,914 + -0.2
807,915 - -1.1
807,963 + -2.2
808,101 + +0.1
808,101 + +0.3
808,108 + +0.1
808,151 + -0.8
808,151 + -0.0
808,152 - -1.5
808,152 - -0.3
808,152 - -1.1
808,152 - +0.2
808,155 + -0.8
808,155 + -0.2
808,155 + +1.6
808,156 - -0.3
808,156 - -1.5
808,156 - -2.2
808,156 - +0.4
808,156 - -0.8
808,156 - +1.5
808,331 + SM_b21241 0.21 +1.8
808,331 + SM_b21241 0.21 -0.8
808,331 + SM_b21241 0.21 +1.8
808,332 - SM_b21241 0.21 -1.0
808,335 + SM_b21241 0.22 -3.8
808,336 - SM_b21241 0.22 +0.5
808,421 - SM_b21241 0.28 +0.4
808,422 + SM_b21241 0.28 +1.2
808,422 + SM_b21241 0.28 -1.2
808,422 + SM_b21241 0.28 +0.6
808,422 + SM_b21241 0.28 +0.8
808,423 - SM_b21241 0.28 -1.9
808,423 - SM_b21241 0.28 -1.7
808,423 - SM_b21241 0.28 +0.2
808,423 - +0.8
808,423 - SM_b21241 0.28 +0.8
808,477 + SM_b21241 0.32 -0.2
808,477 + SM_b21241 0.32 +0.8
808,539 + SM_b21241 0.37 -1.2
808,540 - SM_b21241 0.37 +0.8
808,549 + SM_b21241 0.38 -0.0
808,643 - SM_b21241 0.45 -0.1

Or see this region's nucleotide sequence