Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21237 and SM_b21238 are separated by 40 nucleotides SM_b21238 and SM_b21239 overlap by 20 nucleotides SM_b21239 and SM_b21240 are separated by 154 nucleotides
SM_b21237: SM_b21237 - sulfotransferase domain-containing protein, at 803,187 to 804,110
_b21237
SM_b21238: SM_b21238 - hypothetical protein, at 804,151 to 804,381
_b21238
SM_b21239: SM_b21239 - pectate lysase, at 804,362 to 805,600
_b21239
SM_b21240: SM_b21240 - MPA1 family protein, at 805,755 to 807,743
_b21240
Position (kb) 804
805
806 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 803.433 kb on + strand, within SM_b21237 at 803.433 kb on + strand, within SM_b21237 at 803.433 kb on + strand, within SM_b21237 at 803.434 kb on - strand, within SM_b21237 at 803.434 kb on - strand, within SM_b21237 at 803.520 kb on + strand, within SM_b21237 at 803.520 kb on + strand, within SM_b21237 at 803.520 kb on + strand, within SM_b21237 at 803.524 kb on + strand, within SM_b21237 at 803.525 kb on - strand, within SM_b21237 at 803.532 kb on - strand, within SM_b21237 at 803.681 kb on - strand, within SM_b21237 at 803.681 kb on - strand, within SM_b21237 at 803.681 kb on - strand, within SM_b21237 at 803.704 kb on - strand at 803.802 kb on + strand, within SM_b21237 at 803.802 kb on + strand, within SM_b21237 at 803.802 kb on + strand, within SM_b21237 at 803.847 kb on + strand, within SM_b21237 at 803.879 kb on + strand, within SM_b21237 at 803.879 kb on + strand, within SM_b21237 at 803.880 kb on - strand, within SM_b21237 at 803.927 kb on + strand at 803.927 kb on + strand, within SM_b21237 at 803.928 kb on - strand, within SM_b21237 at 803.971 kb on + strand, within SM_b21237 at 803.971 kb on + strand, within SM_b21237 at 803.971 kb on + strand, within SM_b21237 at 803.972 kb on - strand, within SM_b21237 at 803.972 kb on - strand, within SM_b21237 at 803.972 kb on - strand, within SM_b21237 at 803.972 kb on - strand, within SM_b21237 at 804.102 kb on + strand at 804.103 kb on - strand at 804.103 kb on - strand at 804.103 kb on - strand at 804.123 kb on + strand at 804.123 kb on + strand at 804.158 kb on + strand at 804.159 kb on - strand at 804.163 kb on + strand at 804.164 kb on - strand at 804.216 kb on - strand, within SM_b21238 at 804.389 kb on + strand at 804.389 kb on + strand at 804.389 kb on + strand at 804.390 kb on - strand at 804.390 kb on - strand at 804.390 kb on - strand at 804.390 kb on - strand at 804.390 kb on - strand at 804.464 kb on - strand at 804.698 kb on + strand, within SM_b21239 at 804.734 kb on - strand, within SM_b21239 at 804.734 kb on - strand, within SM_b21239 at 804.734 kb on - strand, within SM_b21239 at 804.808 kb on + strand, within SM_b21239 at 804.808 kb on + strand, within SM_b21239 at 804.808 kb on + strand, within SM_b21239 at 804.808 kb on + strand, within SM_b21239 at 805.007 kb on + strand, within SM_b21239 at 805.007 kb on + strand, within SM_b21239 at 805.007 kb on + strand, within SM_b21239 at 805.008 kb on - strand, within SM_b21239 at 805.008 kb on - strand, within SM_b21239 at 805.014 kb on + strand, within SM_b21239 at 805.048 kb on + strand, within SM_b21239 at 805.049 kb on - strand, within SM_b21239 at 805.064 kb on + strand, within SM_b21239 at 805.065 kb on - strand, within SM_b21239 at 805.142 kb on + strand, within SM_b21239 at 805.143 kb on - strand, within SM_b21239 at 805.143 kb on - strand, within SM_b21239 at 805.157 kb on + strand at 805.158 kb on - strand, within SM_b21239 at 805.158 kb on - strand, within SM_b21239 at 805.286 kb on + strand, within SM_b21239 at 805.287 kb on - strand, within SM_b21239 at 805.465 kb on + strand, within SM_b21239 at 805.466 kb on - strand, within SM_b21239 at 805.466 kb on - strand, within SM_b21239 at 805.598 kb on + strand at 805.599 kb on - strand at 805.599 kb on - strand at 805.599 kb on - strand at 805.746 kb on + strand at 805.746 kb on + strand at 805.747 kb on - strand at 805.747 kb on - strand at 805.757 kb on - strand at 806.040 kb on + strand, within SM_b21240 at 806.040 kb on + strand, within SM_b21240 at 806.041 kb on - strand, within SM_b21240 at 806.042 kb on + strand, within SM_b21240 at 806.042 kb on + strand, within SM_b21240 at 806.287 kb on + strand, within SM_b21240 at 806.287 kb on + strand, within SM_b21240 at 806.288 kb on - strand, within SM_b21240 at 806.501 kb on + strand, within SM_b21240 at 806.502 kb on - strand, within SM_b21240 at 806.503 kb on + strand, within SM_b21240 at 806.503 kb on + strand, within SM_b21240 at 806.503 kb on + strand, within SM_b21240 at 806.503 kb on + strand, within SM_b21240 at 806.503 kb on + strand, within SM_b21240 at 806.504 kb on - strand, within SM_b21240 at 806.504 kb on - strand, within SM_b21240
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 803,433 + SM_b21237 0.27 -0.4 803,433 + SM_b21237 0.27 -1.5 803,433 + SM_b21237 0.27 -0.1 803,434 - SM_b21237 0.27 -0.9 803,434 - SM_b21237 0.27 -0.2 803,520 + SM_b21237 0.36 +1.1 803,520 + SM_b21237 0.36 -0.4 803,520 + SM_b21237 0.36 -0.2 803,524 + SM_b21237 0.36 +0.7 803,525 - SM_b21237 0.37 -0.6 803,532 - SM_b21237 0.37 +0.8 803,681 - SM_b21237 0.53 +1.8 803,681 - SM_b21237 0.53 +0.5 803,681 - SM_b21237 0.53 +2.4 803,704 - -0.2 803,802 + SM_b21237 0.67 -0.3 803,802 + SM_b21237 0.67 -1.2 803,802 + SM_b21237 0.67 -2.8 803,847 + SM_b21237 0.71 -2.0 803,879 + SM_b21237 0.75 -0.6 803,879 + SM_b21237 0.75 +1.4 803,880 - SM_b21237 0.75 +1.2 803,927 + +0.8 803,927 + SM_b21237 0.80 -3.2 803,928 - SM_b21237 0.80 -0.4 803,971 + SM_b21237 0.85 +2.4 803,971 + SM_b21237 0.85 -1.3 803,971 + SM_b21237 0.85 +1.0 803,972 - SM_b21237 0.85 +0.3 803,972 - SM_b21237 0.85 -0.4 803,972 - SM_b21237 0.85 -0.9 803,972 - SM_b21237 0.85 +0.8 804,102 + +0.5 804,103 - -0.2 804,103 - -1.9 804,103 - +0.8 804,123 + +2.5 804,123 + -0.6 804,158 + -1.9 804,159 - +0.1 804,163 + -2.8 804,164 - +0.2 804,216 - SM_b21238 0.28 -2.2 804,389 + +0.9 804,389 + +1.2 804,389 + -1.8 804,390 - -1.4 804,390 - -1.4 804,390 - +0.2 804,390 - +0.6 804,390 - +0.7 804,464 - -0.2 804,698 + SM_b21239 0.27 -2.4 804,734 - SM_b21239 0.30 -3.8 804,734 - SM_b21239 0.30 -1.5 804,734 - SM_b21239 0.30 -2.5 804,808 + SM_b21239 0.36 -0.8 804,808 + SM_b21239 0.36 +2.6 804,808 + SM_b21239 0.36 -0.8 804,808 + SM_b21239 0.36 -0.2 805,007 + SM_b21239 0.52 -0.7 805,007 + SM_b21239 0.52 -1.2 805,007 + SM_b21239 0.52 +1.6 805,008 - SM_b21239 0.52 +1.2 805,008 - SM_b21239 0.52 -0.3 805,014 + SM_b21239 0.53 -2.5 805,048 + SM_b21239 0.55 +1.4 805,049 - SM_b21239 0.55 +2.1 805,064 + SM_b21239 0.57 -2.3 805,065 - SM_b21239 0.57 +0.6 805,142 + SM_b21239 0.63 -0.8 805,143 - SM_b21239 0.63 -0.6 805,143 - SM_b21239 0.63 -0.2 805,157 + +0.8 805,158 - SM_b21239 0.64 +3.4 805,158 - SM_b21239 0.64 +1.2 805,286 + SM_b21239 0.75 -1.3 805,287 - SM_b21239 0.75 +0.2 805,465 + SM_b21239 0.89 -0.6 805,466 - SM_b21239 0.89 +0.5 805,466 - SM_b21239 0.89 -0.8 805,598 + -1.2 805,599 - -0.2 805,599 - +0.8 805,599 - -2.1 805,746 + +0.3 805,746 + +4.5 805,747 - +2.2 805,747 - -1.5 805,757 - -1.0 806,040 + SM_b21240 0.14 +1.8 806,040 + SM_b21240 0.14 -0.5 806,041 - SM_b21240 0.14 +3.8 806,042 + SM_b21240 0.14 -0.6 806,042 + SM_b21240 0.14 -0.6 806,287 + SM_b21240 0.27 -0.8 806,287 + SM_b21240 0.27 -0.8 806,288 - SM_b21240 0.27 -0.8 806,501 + SM_b21240 0.38 -0.1 806,502 - SM_b21240 0.38 -1.3 806,503 + SM_b21240 0.38 +0.6 806,503 + SM_b21240 0.38 -1.0 806,503 + SM_b21240 0.38 -0.8 806,503 + SM_b21240 0.38 -0.3 806,503 + SM_b21240 0.38 +1.2 806,504 - SM_b21240 0.38 +0.1 806,504 - SM_b21240 0.38 +0.7
Or see this region's nucleotide sequence