Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21228 and SM_b21229 are separated by 85 nucleotides SM_b21229 and SM_b21230 are separated by 263 nucleotides
SM_b21228: SM_b21228 - nucleotide sugar epimerase dehydratase, at 792,055 to 792,990
_b21228
SM_b21229: SM_b21229 - calcium-binding exported protein, at 793,076 to 794,239
_b21229
SM_b21230: SM_b21230 - glycosyltransferase, at 794,503 to 795,585
_b21230
Position (kb) 793
794
795 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 792.127 kb on + strand at 792.128 kb on - strand at 792.266 kb on - strand, within SM_b21228 at 792.404 kb on - strand, within SM_b21228 at 792.404 kb on - strand, within SM_b21228 at 792.404 kb on - strand, within SM_b21228 at 792.466 kb on + strand, within SM_b21228 at 792.467 kb on - strand, within SM_b21228 at 792.467 kb on - strand, within SM_b21228 at 792.467 kb on - strand, within SM_b21228 at 792.470 kb on - strand, within SM_b21228 at 792.562 kb on + strand, within SM_b21228 at 792.563 kb on - strand, within SM_b21228 at 792.563 kb on - strand, within SM_b21228 at 792.563 kb on - strand, within SM_b21228 at 792.563 kb on - strand, within SM_b21228 at 792.563 kb on - strand, within SM_b21228 at 792.655 kb on + strand, within SM_b21228 at 792.655 kb on + strand, within SM_b21228 at 792.668 kb on + strand, within SM_b21228 at 792.668 kb on + strand, within SM_b21228 at 792.673 kb on + strand, within SM_b21228 at 792.674 kb on - strand, within SM_b21228 at 792.731 kb on + strand, within SM_b21228 at 792.901 kb on + strand at 792.988 kb on + strand at 792.988 kb on + strand at 792.988 kb on + strand at 792.989 kb on - strand at 793.039 kb on + strand at 793.181 kb on + strand at 793.209 kb on + strand, within SM_b21229 at 793.215 kb on + strand, within SM_b21229 at 793.215 kb on + strand, within SM_b21229 at 793.245 kb on + strand, within SM_b21229 at 793.246 kb on - strand, within SM_b21229 at 793.252 kb on + strand, within SM_b21229 at 793.253 kb on - strand, within SM_b21229 at 793.268 kb on + strand, within SM_b21229 at 793.268 kb on + strand, within SM_b21229 at 793.300 kb on - strand, within SM_b21229 at 793.374 kb on - strand, within SM_b21229 at 793.464 kb on + strand, within SM_b21229 at 793.464 kb on + strand, within SM_b21229 at 793.464 kb on + strand, within SM_b21229 at 793.465 kb on - strand, within SM_b21229 at 793.465 kb on - strand, within SM_b21229 at 793.465 kb on - strand, within SM_b21229 at 793.648 kb on - strand, within SM_b21229 at 793.749 kb on + strand, within SM_b21229 at 793.749 kb on + strand, within SM_b21229 at 793.750 kb on - strand, within SM_b21229 at 793.750 kb on - strand, within SM_b21229 at 793.750 kb on - strand, within SM_b21229 at 793.750 kb on - strand, within SM_b21229 at 793.751 kb on + strand, within SM_b21229 at 793.751 kb on + strand, within SM_b21229 at 793.752 kb on - strand, within SM_b21229 at 793.752 kb on - strand, within SM_b21229 at 793.814 kb on + strand, within SM_b21229 at 793.851 kb on + strand, within SM_b21229 at 793.882 kb on + strand, within SM_b21229 at 793.882 kb on + strand, within SM_b21229 at 793.883 kb on - strand, within SM_b21229 at 793.883 kb on - strand, within SM_b21229 at 793.884 kb on + strand, within SM_b21229 at 793.884 kb on + strand, within SM_b21229 at 793.884 kb on + strand, within SM_b21229 at 793.884 kb on + strand, within SM_b21229 at 793.885 kb on - strand, within SM_b21229 at 793.885 kb on - strand, within SM_b21229 at 793.988 kb on + strand, within SM_b21229 at 793.988 kb on + strand, within SM_b21229 at 793.988 kb on + strand, within SM_b21229 at 794.073 kb on + strand, within SM_b21229 at 794.074 kb on - strand, within SM_b21229 at 794.170 kb on - strand at 794.253 kb on - strand at 794.309 kb on + strand at 794.363 kb on + strand at 794.405 kb on + strand at 794.406 kb on - strand at 794.597 kb on + strand at 794.598 kb on - strand at 794.666 kb on - strand, within SM_b21230 at 794.810 kb on + strand, within SM_b21230 at 794.810 kb on + strand, within SM_b21230 at 794.811 kb on - strand, within SM_b21230 at 795.016 kb on + strand, within SM_b21230 at 795.111 kb on - strand, within SM_b21230 at 795.116 kb on + strand, within SM_b21230 at 795.117 kb on - strand, within SM_b21230 at 795.152 kb on + strand, within SM_b21230 at 795.153 kb on - strand, within SM_b21230 at 795.157 kb on + strand, within SM_b21230 at 795.158 kb on - strand, within SM_b21230 at 795.179 kb on - strand, within SM_b21230 at 795.220 kb on - strand, within SM_b21230 at 795.220 kb on - strand, within SM_b21230
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 792,127 + +0.2 792,128 - +0.0 792,266 - SM_b21228 0.23 -0.9 792,404 - SM_b21228 0.37 +0.8 792,404 - SM_b21228 0.37 -1.5 792,404 - SM_b21228 0.37 -0.2 792,466 + SM_b21228 0.44 -1.2 792,467 - SM_b21228 0.44 -0.5 792,467 - SM_b21228 0.44 +0.8 792,467 - SM_b21228 0.44 +0.7 792,470 - SM_b21228 0.44 +0.3 792,562 + SM_b21228 0.54 +0.1 792,563 - SM_b21228 0.54 -3.2 792,563 - SM_b21228 0.54 +0.4 792,563 - SM_b21228 0.54 +0.2 792,563 - SM_b21228 0.54 -0.7 792,563 - SM_b21228 0.54 -2.2 792,655 + SM_b21228 0.64 +0.2 792,655 + SM_b21228 0.64 -2.6 792,668 + SM_b21228 0.65 -0.4 792,668 + SM_b21228 0.65 +0.2 792,673 + SM_b21228 0.66 -0.0 792,674 - SM_b21228 0.66 +3.1 792,731 + SM_b21228 0.72 -0.9 792,901 + +2.2 792,988 + +0.2 792,988 + -0.8 792,988 + -4.9 792,989 - +1.7 793,039 + -0.1 793,181 + +0.1 793,209 + SM_b21229 0.11 +1.5 793,215 + SM_b21229 0.12 -0.2 793,215 + SM_b21229 0.12 -1.1 793,245 + SM_b21229 0.15 -1.2 793,246 - SM_b21229 0.15 -1.9 793,252 + SM_b21229 0.15 +1.6 793,253 - SM_b21229 0.15 -4.5 793,268 + SM_b21229 0.16 +0.4 793,268 + SM_b21229 0.16 -0.8 793,300 - SM_b21229 0.19 -1.6 793,374 - SM_b21229 0.26 +1.2 793,464 + SM_b21229 0.33 -1.7 793,464 + SM_b21229 0.33 -1.3 793,464 + SM_b21229 0.33 -0.2 793,465 - SM_b21229 0.33 +1.1 793,465 - SM_b21229 0.33 -1.2 793,465 - SM_b21229 0.33 -1.8 793,648 - SM_b21229 0.49 -1.3 793,749 + SM_b21229 0.58 +0.5 793,749 + SM_b21229 0.58 +0.8 793,750 - SM_b21229 0.58 -0.7 793,750 - SM_b21229 0.58 -4.0 793,750 - SM_b21229 0.58 -0.7 793,750 - SM_b21229 0.58 -0.4 793,751 + SM_b21229 0.58 -2.5 793,751 + SM_b21229 0.58 -0.2 793,752 - SM_b21229 0.58 +1.2 793,752 - SM_b21229 0.58 +1.3 793,814 + SM_b21229 0.63 -0.5 793,851 + SM_b21229 0.67 -1.0 793,882 + SM_b21229 0.69 +0.8 793,882 + SM_b21229 0.69 -0.7 793,883 - SM_b21229 0.69 -1.7 793,883 - SM_b21229 0.69 -0.3 793,884 + SM_b21229 0.69 +0.8 793,884 + SM_b21229 0.69 -0.7 793,884 + SM_b21229 0.69 -4.7 793,884 + SM_b21229 0.69 -1.4 793,885 - SM_b21229 0.70 -0.1 793,885 - SM_b21229 0.70 +1.0 793,988 + SM_b21229 0.78 -2.2 793,988 + SM_b21229 0.78 -0.0 793,988 + SM_b21229 0.78 +0.5 794,073 + SM_b21229 0.86 +1.3 794,074 - SM_b21229 0.86 +1.2 794,170 - +3.4 794,253 - -1.0 794,309 + -0.6 794,363 + +0.3 794,405 + -2.3 794,406 - +0.0 794,597 + +1.4 794,598 - +1.8 794,666 - SM_b21230 0.15 -1.2 794,810 + SM_b21230 0.28 +1.3 794,810 + SM_b21230 0.28 -0.1 794,811 - SM_b21230 0.28 -3.4 795,016 + SM_b21230 0.47 +0.8 795,111 - SM_b21230 0.56 +1.6 795,116 + SM_b21230 0.57 -0.1 795,117 - SM_b21230 0.57 +1.8 795,152 + SM_b21230 0.60 +1.6 795,153 - SM_b21230 0.60 +1.8 795,157 + SM_b21230 0.60 -0.0 795,158 - SM_b21230 0.60 -0.3 795,179 - SM_b21230 0.62 +1.6 795,220 - SM_b21230 0.66 +0.5 795,220 - SM_b21230 0.66 +2.5
Or see this region's nucleotide sequence